Package: bugphyzz
Title: A harmonized data resource and software for enrichment analysis
        of microbial physiologies
Version: 1.4.0
Authors@R: 
    c(
        person(
            given = "Samuel",
            family = "Gamboa",
            role = c("aut", "cre"),
            email = "Samuel.Gamboa.Tuz@gmail.com",
            comment = c(ORCID = "0000-0002-6863-7943")
        ),
        person(
            given = "Levi",
            family = "Waldron",
            role = c("aut"),
            email = "levi.waldron@sph.cuny.edu",
            comment = c(ORCID = "0000-0003-2725-0694")
        ),
        person(
            given = "Kelly",
            family = "Eckenrode",
            role = c("aut")
        ),
        person(
            given = "Jonathan",
            family = "Ye",
            role = c("aut")
        ),
        person(
            given = "Jennifer",
            family = "Wokaty",
            role = c("aut")
        )
    )
Description: bugphyzz is an electronic database of standardized microbial
  annotations. It facilitates the creation of microbial signatures based on
  shared attributes, which are utilized for bug set enrichment analysis. The
  data also includes annotations imputed with ancestra state
  reconstruction methods.
biocViews: MicrobiomeData, ReproducibleResearch
License: Artistic-2.0
Config/testthat/edition: 3
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1
VignetteBuilder: knitr
Depends: R (>= 4.4)
Imports: dplyr, utils, purrr, stringr, tidyr, tidyselect,
        BiocFileCache, httr2, tools, S4Vectors
Suggests: DT, forcats, ggplot2, htmltools, knitr, rmarkdown,
        sessioninfo, testthat, EnrichmentBrowser,
        MicrobiomeBenchmarkData, mia, stats, rlang, limma, mgsub,
        methods, readr, crayon, tibble, magrittr, tidytext, BiocStyle
URL: https://github.com/waldronlab/bugphyzz
BugReports: https://github.com/waldronlab/bugphyzz/issues
git_url: https://git.bioconductor.org/packages/bugphyzz
git_branch: RELEASE_3_22
git_last_commit: 1ab92d5
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.22
Date/Publication: 2025-11-04
NeedsCompilation: no
Packaged: 2025-11-04 16:10:24 UTC; biocbuild
Author: Samuel Gamboa [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-6863-7943>),
  Levi Waldron [aut] (ORCID: <https://orcid.org/0000-0003-2725-0694>),
  Kelly Eckenrode [aut],
  Jonathan Ye [aut],
  Jennifer Wokaty [aut]
Maintainer: Samuel Gamboa <Samuel.Gamboa.Tuz@gmail.com>
