BAM
BLASTn
Bioc
BiocFileCache
BiocParallel
BiocParallelParam
Biostrings
Bowtie
DNAStringSet
Demultiplexing
FASTA
FASTQ
Filepath
GGAATTATCGGT
Gapped
Github
Greengenes
Illumina
Langmead
Liao
MGX
MetaAlign
MetaBLAST
MetaBlast
MetaCombine
MetaDemultiplex
MetaFilter
MetaID
MetaRef
MetaScope's
Metascope
MultiAssay
MultiAssayExperiment
NCBI's
NCBI’s
NGS
ORCID
PathoScope
Pre
QIIME
Rbowtie
RefSeq
Rsamtools
Rsubread
SampleName
Subread
UID
al
amplicon
bam
bamFile
barcode
barcodeFile
barcoded
barcodes
biom
blastn
bowtie
bp
bt
buildindex
convEM
csv
demultiplex
demultiplexed
demultiplexing
dir
epidermidis
et
exampleh
fasta
fastas
fastq
filepath
gz
maxMismatches
metagenomes
metagenomic
metagenomics
metascope
metatranscriptomic
microbiome
mk
multithreading
musculus
nBestLocations
nsubreads
nt
nthreads
num
outpute
parallelization
parallelize
pathoscope
phix
phredOffset
pre
premade
qiime
qnames
rRNA
rds
redownloading
refseq
reheader
reheaders
ribosomal
rnames
sam
sampleName
sampleNames
samtools
silva
subdatabase
subread
taxid
taxids
taxize
taxonomizr
threshhold
tibble
tmp
tsv
unmapped
yieldSize
