Package: GenomicState
Title: Build and access GenomicState objects for use with derfinder
        tools from sources like Gencode
Version: 0.99.17
Date: 2025-07-29
Authors@R: 
    person("Leonardo", "Collado-Torres", role = c("aut", "cre"), 
    email = "lcolladotor@gmail.com", comment = c(ORCID = "0000-0003-2140-308X"))
Description: This package contains functions for building GenomicState objects
    from different annotation sources such as Gencode. It also provides access
    to these files at JHPCE.
License: Artistic-2.0
Encoding: UTF-8
Imports: Seqinfo, GenomicFeatures, rtracklayer, bumphunter, derfinder
        (>= 1.21.7), AnnotationDbi, IRanges, org.Hs.eg.db, utils,
        methods, txdbmaker
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Suggests: knitr, rmarkdown, BiocStyle, sessioninfo, testthat (>=
        2.1.0), glue, derfinderPlot, AnnotationHubData,
        GenomeInfoDbData, RefManageR, GenomicRanges, covr
VignetteBuilder: knitr
URL: https://github.com/LieberInstitute/GenomicState
BugReports: https://support.bioconductor.org/t/GenomicState
biocViews: Homo_sapiens, TxDb, AnnotationHub, AnnotationData
Depends: AnnotationHub
git_url: https://git.bioconductor.org/packages/GenomicState
git_branch: devel
git_last_commit: 24ea063
git_last_commit_date: 2025-07-29
Repository: Bioconductor 3.22
Date/Publication: 2025-07-30
NeedsCompilation: no
Packaged: 2025-07-30 10:33:40 UTC; biocbuild
Author: Leonardo Collado-Torres [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-2140-308X>)
Maintainer: Leonardo Collado-Torres <lcolladotor@gmail.com>
