f66b6eafe5c37e4960e9224b36e0cb99 *DESCRIPTION
8e52721966e809055486cdc90dc5fde2 *LICENSE
2b264a51805b5660f0fdba44d3ac2d49 *NAMESPACE
a109a987522cb0daa054c248859bc63b *NEWS
26b4e239fb6bac3a35ed4b339a03e266 *R/TriplexViews-class.R
8c6ad50504baa8d0e9a378ac5a16d9eb *R/constants.R
101d9370cb609e56d1da987cd6fb2d69 *R/triplex.3D.R
09e215be428b01af39873f437f2a001b *R/triplex.align.R
c01b2d19f422160b5d464eb6dcf5cfdf *R/triplex.diagram.R
a1e9ef14135db40e56699c1d3106d8bd *R/triplex.input.R
90aa0d676341a9b94aa2dbe25909065d *R/triplex.search.R
661f212980e36ee909b30a2e358165b8 *R/triplex.table.R
ac99755ce5644c9f2aee6d02917860a6 *build/vignette.rds
2ddf21e38cbe0e710f29ce96d9ab3c2c *inst/CITATION
fe0c1c42bfac314b60ec5c3e2a3d1909 *inst/doc/triplex.R
b5ada4dbd3bd4a72e2cdaeb6ea1d72fa *inst/doc/triplex.Rnw
17e99c7b7bbbdfd1c3802ba5bde2f8b0 *inst/doc/triplex.pdf
aeceed312e64f48c938fd670c0f809d5 *man/TriplexViews-class.Rd
0af0808715e103ba9956ef8f24fac630 *man/figures/triplex.pdf
b58f6bc3b261ffedc91a673f21e6e144 *man/figures/triplex.png
1ab0b4ef13cfffd04bdeff266cacd06c *man/figures/triplex2d.png
82b7fe7fe1e14e1d7ca2199037ec3515 *man/figures/triplex3d.png
005c52b2c6f82268eb159d6b3d06d617 *man/figures/types.pdf
c5aa9449340a351ab057c27f13894bd2 *man/figures/types.png
f2e0e12c5633accc5e37a3a375376155 *man/ins.Rd
fb0331065c8b051c532016906022c51f *man/lend.Rd
15db03a8ac9c3a3612e46fe29726bae4 *man/lstart.Rd
b66366e02356e21e9f35272dc9eb2abf *man/lwidth.Rd
0200e65b7630df6b0141abcad9bc9c88 *man/pvalue.Rd
136206c793462e65f6f1607a3429a147 *man/triplex-package.Rd
b37379adc87202b384ccbfaecb543660 *man/triplex.3D.Rd
3dd0ffda73057f3d9e93f6562543fd98 *man/triplex.alignment.Rd
64702c1e4f6e85736dc80fb236f42c88 *man/triplex.diagram.Rd
b2fda17f81323b1a86fbf2d905922f1c *man/triplex.group.table.Rd
1e117f1a5622ec740be246ad2f7820d7 *man/triplex.score.table.Rd
70ca272a1d4efd2489f7c03598094c57 *man/triplex.search.Rd
bf5efb0b43bf14b195b77d8b13d5c213 *src/Biostrings_stubs.c
e01bcd74abe55caef1e0c77ccc0fe048 *src/IRanges_stubs.c
c177396ee16e11e295dbfdadcac3c84f *src/R_init_triplex.c
27061828de82d4e155d47d139d19c52a *src/XVector_stubs.c
56122a1752d7bb8259b0e6057ff92d68 *src/align.c
59e45668ca3cdc5ee34dba99b69a040d *src/align.h
ec52682289f996d6234dd3075384592b *src/align_interface.c
e4d567ab3b1ff16e7b4580f7a4aa3c5c *src/align_interface.h
f416a5e64af3f9712ef79bede3f8bbf3 *src/dl_list.c
d6bc369631da0108c604ed9de1791147 *src/dl_list.h
f42c970a0758783d6da604f9132ddf4e *src/interval.c
f8f3b34c4c9d061c9fa62d5adfdd74ec *src/interval.h
39ada57ebe8fd4b4ca526f2d82ea3ce9 *src/libtriplex.c
7383234a65434eecb8b738e59cac794f *src/libtriplex.h
3903abfe48cdf6fdc7e13d665732ce73 *src/progress.c
2772ba3d65431f40a2f07cd5fe649301 *src/progress.h
0beeadcfd1c0bf969b41af212670b5fd *src/search.c
7b3a93c9444017fe7a493d5be10fd96a *src/search.h
2e9d8e809786555aaa1be144fe6dff6c *src/search_interface.c
9717c0de12e1dd674625cbc07e0bcaa9 *src/search_interface.h
0af0808715e103ba9956ef8f24fac630 *vignettes/fig/triplex.pdf
61ac9e69471d868846fd2952f77dde82 *vignettes/fig/triplex3d.png
31256bb8f0fe681441094f085a4a70b7 *vignettes/fig/triplex3d2.png
005c52b2c6f82268eb159d6b3d06d617 *vignettes/fig/types.pdf
b5ada4dbd3bd4a72e2cdaeb6ea1d72fa *vignettes/triplex.Rnw
