b1081931f5219352d03b089e37746446 *DESCRIPTION
f0280bb2a31fa0e718654c51af94d568 *NAMESPACE
8fb0ffbd55efdf26c50b0ba57e90960b *NEWS
620870c3d1f55a95545da6c13ee13c00 *R/ARA.R
fea90d9ffea1592b755e0ffee9bf6d70 *R/GIoperator.R
11d6517326f098ed0f8043889029fc1a *R/GRoperator.R
4cecaaefab1a53b23247f7a96b8e6233 *R/addArrowMark.R
e5fd2be90e162f56034c707e85b3ad01 *R/addGuideLine.R
054f546ae6b8c7e2ea6d71b3bbe8aa97 *R/addInteractionAnnotation.R
20d59f60e0959fc93942365be90bbbd8 *R/allclasses.R
5a9c3721ac1fd25a775374215bc9b98c *R/browseTracks.R
79c1044b9f7671df8de6fb402995db45 *R/cooler.R
ca524dffb137f5360e7f2629a4d3cded *R/coverageGR.R
fa59b1cae1c6dae7d9d6ed7f3e43f004 *R/dandelion.plot.R
e410229aa0f5d665a93291078a64e8ad *R/geneModelFromTxdb.R
52a290b8d971355f2b4145d72f796ec5 *R/geneTrack.R
299d4ce77fb4329cabf9c1fd88a1485f *R/getCurTrackViewport.R
c4ba553f3c6bd022345048f5070c0e4e *R/getGeneIDsFromTxDb.R
8f69174b7981e90d5316855c3cb3ea2c *R/getHeight.R
a876d201aeb69bb17093060fceae2f7e *R/getLabelsMaxHeight.R
a175608a343622514841909b4a165a3a *R/getLocation.R
799bd7d126ea8da2767b46589cc7f202 *R/gi2track.R
a60ddd875f177a409edccc35db8ce572 *R/grid.dandelion.R
2b9b8aa923b3b33e76535baf62b044ac *R/grid.lollipop.R
7e1ed62bde9027c056f9af23842e5e58 *R/ideogramPlot.R
b4bf4836c683abb3434ad3bdb5743a54 *R/importBam.R
de7d1b335c3aecd82c6eb3585cfcc2d3 *R/importData.R
f19292e3394bf3e87f2088497f351ae4 *R/importGInteractions.R
60bfa162c7f7319e161dce5103fc5c15 *R/importScSeqScore.R
606acaa7d67ae9a13d0e172feb11f875 *R/importScore.R
8d260c84ea77c25da585fddb58b0665c *R/listChromosomes.R
7a1ae55feaddb7d8d1590a3196a97df0 *R/listNormalizations.R
9a5fe298265a73da36889a934fb5528d *R/listResolutions.R
86eaddff4bb9c8427e1bc55755b2f9e3 *R/loadIdeogram.R
ad68e7fc3cb46d4d06c85076e6c7710d *R/lollipop.plot.R
65b8684233507c717f5531859eccfb1a *R/optimizeStyle.R
bff64e72829bccd4f5b29ffe46666945 *R/parse2GRanges.R
c27a43bb69c3f891e46883ab67829201 *R/parseWIG.R
b953da0d986844baa9b93031ab8235f8 *R/plotGRanges.R
083816a67e737fb9e536cc46aca2222a *R/plotGeneModel.R
dc2aa5233594982e8098506af948d763 *R/plotGeneTrack.R
b277857f8176c63222a9ab499dcb844a *R/plotIdeo.R
60edde5c6a06b246b111b367558fc8dc *R/plotInteractionDataTrack.R
ef93d0714de2e153680fe89d22774ccc *R/plotLollipopData.R
2ff4b8a7d243e8772fbbe3671018c213 *R/plotLollipops.R
96be4fe0c612dc1b178b7a0f9751f845 *R/plotOneIdeo.R
9e255d5fb1c76e66e8453b4796fd76ef *R/plotScSeqTrack.R
d9a49220b6aa7fe61e5f3c699f96efe9 *R/plotTrack.R
661e6318bdd059eae2ddf7b74c441816 *R/privateUtil.R
729e93edb888ee777b9680e703129b49 *R/reduce_GInteractions.R
aa28d2a10f880e8e01d4804588c4794c *R/trackViewerPackage.R
3ed03297765951a3324d70f34ed89ea4 *R/viewGene.R
6ce18c24026ef4a13bd5f93b57f45307 *R/viewTracks.R
54135861bc49c8b98ef84410e4745264 *README.md
2b9b0f13dd54db8b8baff8e73703f7eb *build/vignette.rds
044391f7d75bfe806f1ae0ec8e98a676 *inst/CITATION
d649046bbe3921d6394cc4bf87ce7897 *inst/doc/changeTracksStyles.R
3f3f4630839970c409b9c8921840b66b *inst/doc/changeTracksStyles.Rmd
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5364788608121683d2ec70c3ecbecf21 *inst/doc/plotInteractionData.R
cb429a542d6b5fc88d0a4736f800c41a *inst/doc/plotInteractionData.Rmd
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61cd735435d27407c40e73f2f403dac0 *inst/doc/trackViewer.R
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f62a14cff00115f66810cf1fadf59e81 *inst/doc/trackViewer.html
10569da0fc195a86123c12b53b356560 *inst/extdata/cpsf160.repA_+.wig
1e4c9fcc7b92e6a8b491c55bcf969f53 *inst/extdata/cpsf160.repA_-.wig
f08dd647fd6b8932e4853b95cb479ec3 *inst/extdata/cpsf160.repB_+.wig
a0b0b0381440eab73b8590c32eefa4ae *inst/extdata/cpsf160.repB_-.wig
9678c0686949d4b46da6a15b4a4526e1 *inst/extdata/ctcf.sample.rds
ac545c8859057a3f0b1e8409e16f6e6c *inst/extdata/fox2.bed
6e6b777f59dbf8e7f6fc912018592dc5 *inst/extdata/gi.rds
a1d42ab318b4fa5b0f9780a2465d61cc *inst/extdata/ideo.hg38.rds
a5867c139f6d6263e792d81f91146c33 *inst/extdata/map-pin-red.xml
2b9fb2710e2346e50dc491a716b94157 *inst/extdata/methy.bed
7aa96a40df9ade3df7096f4d11c54813 *inst/extdata/nij.chr6.51120000.53200000.gi.rds
284b7ef095a9ecb4190ed1f9e4ecbd34 *inst/extdata/test.cool
f39b3b39ae1be3215d1692cb14fbcf7a *inst/extdata/test.mcool
f1075213de7b71bab7547554f72abe5f *inst/extdata/testBp.hic
416614e654912648af63454ba7da96b0 *inst/extdata/testFrag.hic
0466f616913f4e76a344e0e31f6699bb *inst/extdata/test_chr22.hic
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e975474b4f8fc4d7313cd33fa68a8521 *inst/htmlwidgets/browseTracks.yaml
2c40c3447d2c25dad73c0695696f585a *inst/htmlwidgets/lib/d3/d3.v4.min.js
1c1639d138e848c9f80b7381713cd9af *inst/htmlwidgets/lib/saveSvgAsPng/saveSvgAsPng.js
eb497e2ed2c90acc0e973039b2da76cb *inst/unitTests/test_coolerFile.R
3884d025b44d0de595425308f57c4f28 *inst/unitTests/test_coverage.R
da42e2cb2c2afa767cb1e95613797f4a *man/ARA.Rd
8138ba49decde479612a1ad80df37347 *man/GIoperator.Rd
c3cf5533cb78249b0b1a300bef2ce980 *man/GRoperator.Rd
b07ce6f26fef3054455695f67bd5f4e8 *man/addArrowMark.Rd
26ff9e683a87b9b594c84fb9c437d38a *man/addGuideLine.Rd
18c2cee14ea26430f108066fac971238 *man/addInteractionAnnotation.Rd
a796e5f13314c99db4fd2d73bfda444b *man/browseTracks-shiny.Rd
076783a39b371736048f33d74a230c5b *man/browseTracks.Rd
6d9430f054c917dc2fde5567e7f9667a *man/coverageGR.Rd
3ae26dc782e044793631cab7e4b94c1e *man/dandelion.plot.Rd
18a2fa6bab01ddd50c8992e0b3b6ffa9 *man/geneModelFromTxdb.Rd
19a119541efe16a3ce02b622081d81d7 *man/geneTrack.Rd
85d455aaba96bf3faddabe0d1af4eed3 *man/getCurTrackViewport.Rd
428aa787664a78761083388d7ca21c2e *man/getGeneIDsFromTxDb.Rd
dc08c13bb6c95cffe3b931335898fbcc *man/getLocation.Rd
1be19685185cd4cf9d28113a4d3fe718 *man/gi2track.Rd
89bcfb6b7b1590efbd62e657d42bca9b *man/gieStain.Rd
c96037ac276e56f0d14a107d108ddd70 *man/gridPlot.Rd
178e1eb935e7c1d8b445c4f7c981a75f *man/ideogramPlot.Rd
2dfcbb76bf4de6f25aa66144177f2239 *man/importBam.Rd
509d77d139403356f38ae1a97d975a49 *man/importData.Rd
08d0ca03221dd0da0a7621a0b083da5e *man/importGInteractions.Rd
9ac5e6535eb57746e5c4491337ab001e *man/importScSeqScore.Rd
3424aa4d21a87a850a2048d25999ccfd *man/importScore.Rd
e30631a6fbb9cc81ad51b70ef0cba6e8 *man/listChromosomes.Rd
f185516d5f7f865d0812ed7c0e908e72 *man/listNormalizations.Rd
c0c9b15689be9635b7ef6a4df3c4802c *man/listResolutions.Rd
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3f79a5adcbb286238e2d2d3752ddd224 *man/lolliplot.Rd
c1e6343f4414109cc3a41da3a217db41 *man/optimizeStyle.Rd
fe4eb120339ce367935b80c89eac2033 *man/parse2GRanges.Rd
79b91096a190d96dfba9488c9c670891 *man/parseWIG.Rd
11a0d4943c03b971410f923cdb94b83e *man/plotGRanges.Rd
a91156dac83929f8c896fa5d3a3ce0ac *man/plotIdeo.Rd
1965f5cd11821fff77eba485a27d6f40 *man/plotOneIdeo.Rd
0e932eda5966f431ab47a7bc990e532e *man/pos-class.Rd
7a8dd2484dedf2eaa24ca9d471600029 *man/reduce-GInteractions-method.Rd
0382b022ee556f299642537cc0cfdbd1 *man/trackList-class.Rd
34b030d599f003e759393bee4530db58 *man/trackStyle-class.Rd
97f0b2923b8eea0e75a6572e698eddb6 *man/trackViewer-package.Rd
c3464a842f90ef88a36c3cbfd2fb5e01 *man/trackViewerStyle-class.Rd
0f579fdc6bf824708621f9b7f9976b09 *man/viewGene.Rd
05faee3803f1576534c8294180b09372 *man/viewTracks.Rd
84e19851e6c2e9035c04fab73b514bd8 *man/xscale-class.Rd
a0ca82435d604e32b9ef06c602d487a9 *man/yaxisStyle-class.Rd
c5261c30acbf5ca56ed6e41ff8e31499 *tests/runTests.R
3f3f4630839970c409b9c8921840b66b *vignettes/changeTracksStyles.Rmd
e0c65a1caed4605106d8107127523558 *vignettes/dandelionPlot.Rmd
d705fe9615e647f5b1faff7e46567b9e *vignettes/lollipopPlot.Rmd
cb429a542d6b5fc88d0a4736f800c41a *vignettes/plotInteractionData.Rmd
27c2500d9ef2f7f2fc4b8d6befe4ed34 *vignettes/trackViewer.Rmd
