e3e102886f707b883394d671d843baff *DESCRIPTION
ee9fd897da602c49b1c5e6ea66ea55bc *NAMESPACE
a5c8be4d9cc2d3c259bf08323ac73424 *R/data.R
090873cf4a31c155b1b044a5b338a464 *R/interaction.R
c624d1c7390e7795a60af0774f6dd7d8 *R/parseChIP-seq.R
d1602ef9ce97dce6f6a86b7c1e0a8f4c *R/parseInteractions.R
06f58ef092670dbf1337f35dd0ec321d *R/prediction.R
c7ce7a5cc2f8a277411f897b948603c3 *R/sevenC.R
fd4653e86dc979bb423f1ce4d42464cc *README.md
18ea73ba63e4e0a5b9d3d52c3d0d5636 *build/vignette.rds
7b0e29f91914ecaa4f2df1fd1ebca183 *data/TFspecificModels.rda
633fa96376a017a904604fd629195a33 *data/cutoffBest10.rda
651158706ff72bdcc2e791eac607a05b *data/cutoffByTF.rda
c23726fe585aae8ff21273b5e524307c *data/modelBest10Avg.rda
f9e982b84a8984b6f2eaf661897d936b *data/motif.hg19.CTCF.chr22.cov.rda
1eb5df4e8488524691ee3373b763e797 *data/motif.hg19.CTCF.chr22.rda
69d13aca9cfd29c71f38348286cae88a *data/motif.hg19.CTCF.rda
2766fa31ef580df6e25679aac986d409 *inst/CITATION
5a2bf0f9cd84f3f060e22560998a3b18 *inst/NEWS
7602ea5a36cf4633de323286f8cb6f36 *inst/doc/sevenC.R
da33f771e67d53d57c77f4a6232f98d9 *inst/doc/sevenC.Rmd
835834c270676a84e7cfb6552b470088 *inst/doc/sevenC.html
988f4ff71c39ff2633a1fe7206145302 *inst/extdata/ChIA-PET_GM12878_Tang2015.chr22_1-30000000.clusters.txt
2621170810eca9361a74ad45c046e4fb *inst/extdata/GM12878_HiCCUPS.chr22_1-30000000.loop.txt
5dd23a868bfe428ddaba75e1e32fb81c *inst/extdata/GM12878_Stat1.chr22_1-30000000.bigWig
a95ce61686cbe6012f1d6efdde618638 *man/TFspecificModels.Rd
b481789823ef98a648f64e6f69096eb4 *man/addCor.Rd
35bbbcb8baf207e1a507b91f0a5d40ec *man/addCovCor.Rd
75996927426af928e9373a6920690bcc *man/addCovToGR.Rd
b7e73fe27d54b25e441a18db9ded2593 *man/addInteractionSupport.Rd
fc187aa3c6dfee882e8d5448bf1f3f78 *man/addMotifScore.Rd
d02b3424ffe9cc48db60388c39f5d619 *man/addStrandCombination.Rd
adbcfde16b099ac3ba80e88085259416 *man/cutoffBest10.Rd
86c0707dee3a1b69200a273c96ca2275 *man/cutoffByTF.Rd
947b6c1f2c7ef2c910485df64ee78e98 *man/getCisPairs.Rd
d87c55a72cdc27940bf3711777c5556a *man/getOutOfBound.Rd
cfbcfc9f49a1587fd192ff95d2c7c9a4 *man/modelBest10Avg.Rd
f3548a9af298f2531f429b6bff64973b *man/motif.hg19.CTCF.Rd
84cf62b25909f9120b4085100e35ecf9 *man/motif.hg19.CTCF.chr22.Rd
c3b264570a8876353cd69d4da985d701 *man/motif.hg19.CTCF.chr22.cov.Rd
0849f68cc319bc703bf73f53ee776e98 *man/noZeroVar.Rd
5b84ddb8d2c5b16ff3da53a4076f61f4 *man/parseLoopsRao.Rd
6d66c6222c5248488f60889b20a7a3b7 *man/parseLoopsTang.Rd
8e9f5caad8b45caf8cafab205e90a89f *man/predLogit.Rd
f4c82d9f95efbd30863dda8a49aaae19 *man/predLoops.Rd
4cf6fb938b44ff6a41b908f5c4cfc910 *man/prepareCisPairs.Rd
064735767cbd8605a805dc3a78576ff5 *man/sevenC.Rd
1e5bfaa483bc24fe95e4b5f5e21b5c6d *man/slideMean.Rd
7cfd7733df8e9b9e548e3d7890d25c16 *tests/testthat.R
52f283a85720982e26655f0550e4278e *tests/testthat/test-interaction.R
d184ca9680a803b78dbe9e9953c9c563 *tests/testthat/test-parseChIP-seq.R
95b41244bba7643bac86cc417e44003c *tests/testthat/test-parseInteractions.R
489955c02e7b404d4374ecb838e7006b *tests/testthat/test-prediction.R
da33f771e67d53d57c77f4a6232f98d9 *vignettes/sevenC.Rmd
05e9f4965dcc4a813a38b735db35d7ae *vignettes/sevenC.bib
