278dcf27e2d3846ae77fa5ce4ed0d77c *DESCRIPTION
bc20c742b2191f10f3413b8d77e06a98 *NAMESPACE
9e6cf232627c265d911338adbb4a569b *NEWS.md
cfb0dc97238605a82288bff1ad4b5122 *R/methods.R
ecdc2e94b43a3a3ffe1c5ad7d2c2c44a *R/package_data.R
07b96e2f7ac7b2a7e2956ba1c5f5f1d4 *R/readers.R
ecec8308ebf41c39fef0677ecd2c3ca1 *R/system_calls.R
b895b0621a36705bd1fb4d6e7270cb91 *R/utils.R
4bb61e5394f438b3b09239486362691d *R/visualization.R
1e55d7d66766d4024b23ee4a645fe200 *R/wrappers.R
e550ecfc6b43f808154ab3f82272aee1 *README.md
268c15a99bad94728f9b51b7a16c6e94 *build/vignette.rds
1e357b484e17bd9bbb7c8b7ed1460d20 *data/test_obj.rda
9a405938ea92ec7aeee0e43356620752 *data/test_objs.rda
da7224c8828a696b9dbdf1c2554fc639 *inst/doc/segmenter.R
b1d4aa2c8dbb77cf1cf03b182883ee15 *inst/doc/segmenter.Rmd
bda2d2ea6608cb1ea69eec7bbfd2a333 *inst/doc/segmenter.html
e19a5aa9ee51e8c94279227b40cb47e8 *inst/docker/Dockerfile
4fe819f1605a90384ec519d9e444b3cc *inst/extdata/SAMPLEDATA_HG18/GM12878_chr11_binary.txt.gz
14c60af3ca10dddb4ab0a74ddade486d *inst/extdata/SAMPLEDATA_HG18/K562_chr11_binary.txt.gz
1f3d05f7ff502749ffb3879e26ecd76e *inst/extdata/cell_mark_table.tsv
ca49abe62820222ef47dd1b9f30727d1 *inst/java/ChromHMM.jar
933df10649fbce6be99b2c73afafe530 *inst/script/SAMPLEDATA_HG18.R
301cf4d79731d54a6b74a7e615b28e91 *inst/script/cell_mark_table.R
c42a85fe7b394bf906c8effe88aee1f1 *inst/script/test_obj.R
e5c3b239fa4a0592b59cbaf9f141b585 *inst/script/test_objs.R
b7f1d64c52fcf4243861f06a00864cc7 *man/accessors.Rd
d6d4a0cd0557128d689e07cc63bdbe17 *man/annotate_segments.Rd
170b947688f7d717d3e9d5fa9139c7b4 *man/binarize_bam.Rd
268f761be63abef94f1d62eb664cd5c2 *man/binarize_bed.Rd
a469edd799218ce731b42494964b5565 *man/compare_models.Rd
6bea81d2e6626c2923833a8d596a3603 *man/count_reads_ranges.Rd
b3d23ea7492ab9c468ca57b019c18af3 *man/dot-Binarize.Rd
3f0aada5b3b4bcd9a991894461012798 *man/dot-LearnModel.Rd
fb4085f8c969ef4d7f26aaaac41ad19b *man/emissions_file.Rd
f4527a03058a80d82b7bcef0e74df21b *man/enrichment_files.Rd
055ed02ef19ce7ebf74814023c8595eb *man/get_frequency.Rd
37a2e45b245d6377a67c609dcfbf0074 *man/get_width.Rd
752b973bae9fb76c01fac70e16ca7af4 *man/learn_model.Rd
a6cf1702c8ab0c562644db87abca84d1 *man/merge_segments_bins.Rd
97388e7dde017f54b78910b026b58ebd *man/methods.Rd
3fd5137e47808c4fdf41718094050fb5 *man/model_file.Rd
3a58af4c80a0cb7cfa8b823df8ce68b4 *man/overlap_files.Rd
054f8cdee6acf17b9118e13b9340f03c *man/plot_heatmap.Rd
4519757b9a74fb29336bd6b59f0697ed *man/range_bins.Rd
5b9139e6ceefc392c7e7d1e497995a29 *man/range_counts.Rd
ee23c02311514cc5e941a9fb0e82f763 *man/read_bam_file.Rd
3a04eae0717e80991c34c767cf3501b8 *man/read_bins_file.Rd
3935da33f909751715dc28171114c7d8 *man/read_cellmark_file.Rd
a36ce1f02d78bbdd28d591013430c4cd *man/read_chromsize_file.Rd
2b4193e1b920106a2fb3ab5ab4fc0a01 *man/read_emissions_file.Rd
7f8f4de549651ea69fed8f6d09fd57a0 *man/read_enrichment_file.Rd
c7c6ae46cdf7e3e93dda9def8ab3e42c *man/read_model_file.Rd
0d690c18492235fcc7dd35007c8e0166 *man/read_overlap_file.Rd
44dab432b9e7a910254821ac48fdfe83 *man/read_segements_file.Rd
23967bf2b6a97bb888680856fd81f493 *man/read_transitions_file.Rd
688738ea22dbd3701bd77e1da7bc783c *man/segmentation.Rd
a806e45c56c8b8a1837e17e78ec25641 *man/segments_files.Rd
ea90f8074dddb47eb1755446e7045c8f *man/test_obj.Rd
6427589e569a021e0600226a5ff76bbf *man/test_objs.Rd
b3fe396f09ec1b24bb8f4344d392c6c0 *man/tidy_ranges.Rd
37695c8b5baa94c679b58b6e7781d3f7 *man/transitions_file.Rd
ece2b1b1f9208c1f7bce35a5e9f60b19 *tests/testthat.R
94b19f76b4f6a8f90908f5f607a7da6f *tests/testthat/test-methods.R
64d76f8e39bff0c6742aa4987adbb5c5 *tests/testthat/test-readers.R
26b664ab0a98a44da67c5e49e3cc859a *tests/testthat/test-system_calls.R
63eba831ffaeea085781903a2ebce90e *tests/testthat/test-utils.R
d61b4908befd10f34f8a901648f220e8 *tests/testthat/test-visualization.R
9707f549b733a835015994c8e55ca836 *tests/testthat/test-wrappers.R
b1d4aa2c8dbb77cf1cf03b182883ee15 *vignettes/segmenter.Rmd
