cf9d80b3324d25e640fbc80b8bfff454 *DESCRIPTION
0e6998dccf2e1a257c3a2f3188966d68 *LICENSE
dc15f7e5190e6fa98f3b40e5d9fdffc0 *NAMESPACE
ac1083784b9780e020dadf9accbeb2c9 *NEWS.md
f503f44993db7d05b7c29b0f06d4c082 *R/alignRsubread.R
279f50e47569cd5b1178720313429cdd *R/countUMI.R
18d0657154160e3c8af79e85f0b8dcdc *R/data.R
bcf4c9116e6822153d3a9870e9563b3e *R/demultiplex.R
125bf430a3a851c3d8e16e2f95744e41 *R/global.R
600e7416b50acbb7c25d6e2f898bf7ac *R/gview.R
dd8e8384eeb2224873c261992d892a25 *R/qcplots.R
1b41043b0879e3297f01b8a4350984bb *R/rview.R
11755a4bf2b51ae3994c900bdb9322b7 *R/scruff.R
5dbd5336361cdf526c94da9f244c4c13 *R/scruffFunctions.R
10c858820ad65f87b5e2b34230b06522 *R/tenxBamqc.R
e0dc5b8d0f0efa6a0ade629c6b7d0996 *README.md
c9a960dfca0f0f041495fbac0dc83b80 *build/vignette.rds
645e2ce767f01cf7909244e83eeb277d *data/bamExample.rda
fcb4e82f263128042dadf13f0fab612f *data/barcodeExample.rda
89bc6ff8fb0bef0f4510654ca33eecb0 *data/cbtop10000.rda
e51860626d7cfc5556a151308a61f77e *data/sceExample.rda
fcfc07765b48350083f125a31070c35f *data/validCb.rda
7e3fdc80a9f02aa5dcd26929bb124793 *inst/NEWS
77baa02ee0cf6e6bb7e159a980aa9d91 *inst/doc/scruff.R
f9ffd6f18bf349ceb38d9d396e4a10f0 *inst/doc/scruff.Rmd
4d9d5cb4739faf531aa9df5caef6b67c *inst/doc/scruff.html
c0b8b94c37ead1dd7feed0186747e53b *inst/extdata/GRCm38_MT.fa
09e36a1c6a9f668a2487ec5c58ce1b9c *inst/extdata/GRCm38_MT.gtf
b505b41fd5718ffd3eb71813d0d4fcae *inst/extdata/SRR5167880_E18_20160930_Neurons_Sample_01_5000.bam
74abe8130c02e803e66c0e3b57201761 *inst/extdata/SRR5167880_E18_20160930_Neurons_Sample_01_filtered_barcode.tsv
0fdf95c3beb5eff50934204c6109adf2 *inst/extdata/vandenBrink_1h1_L001_R1_001.fastq.gz
983a0032d33116c75363d1d1efa54275 *inst/extdata/vandenBrink_1h1_L001_R2_001.fastq.gz
8b31b5d541b9d14eee3ba194731838f6 *man/alignRsubread.Rd
7db212a67f0f7a98b29ad8bd4b22462a *man/bamExample.Rd
6fee5b5a7bac4454a08838151d6de382 *man/barcodeExample.Rd
6e67df80bd3e9dcdcef8dde9b89543ae *man/cbtop10000.Rd
7d6243828df4914431b20da87164efba *man/countUMI.Rd
6e96bb29e7de81241b03942e6501cf96 *man/demultiplex.Rd
92a0362f2cb7848f9224497900b6e41d *man/gview.Rd
ffea7a00e504d3a1e2c3291c0bd61e4a *man/qcplots.Rd
32754dec1c0a51e462c9bc244145a057 *man/rview.Rd
2d62dc50fdc6a1b365959cda59fdb03b *man/sceExample.Rd
8eb9c41e277da31b03c4eba7aa5bffb2 *man/scruff.Rd
c7396028ff0e91756bbd46b46768268e *man/tenxBamqc.Rd
f484eea46793e115da35e1a409da42f3 *man/validCb.Rd
1f418d2a34e00ddbbb658e4750c0482e *tests/testthat.R
7bfab69e9307a8fc51d23e51790549d4 *tests/testthat/testscruff.R
f9ffd6f18bf349ceb38d9d396e4a10f0 *vignettes/scruff.Rmd
