f92b1cf24f8271aa8c2c72f597b8c870 *DESCRIPTION
4d0c56408e613f76c4877cc224aa3f77 *LICENSE
d89040254e897688340701ffc4628113 *NAMESPACE
ae8303585cda2c359397fd3c6ab6294e *NEWS.md
ad826709f335272b61c39cbd44215bef *R/RcppExports.R
c39c4a2c7835b65b0512fa5d2bcf2e71 *R/backward_sel_WIC.R
7a8d58cd4b0795a229bfdbd0e34b515a *R/biasCorrectGEE.R
75a549ed5408fd3013a2ae123888c9e7 *R/bootstrapRandomEffects.R
86e35e525a5e37c11d63b27c7ec6313a *R/chooseCandidateGenes.R
bc55b3547631aca74b1e1ca5b881e774 *R/clusterGenes.R
c1dc372ab58bc0f8778f1fc757fb592f *R/createCellOffset.R
8fd0a8875e5ca58658cffd6b638368dd *R/createSlopeTestData.R
1b9136ce64f91f27dd87563a7aa82842 *R/data.R
93b2c2ce0820515abab888cc2735a10f *R/embedGenes.R
12f2cac0d3bbe72f3829026f1a896985 *R/enrichDynamicGenes.R
588d63d11f7424d688bbe32ffd248f97 *R/extractBreakpoints.R
572630efcf3063f504d020b78ae9abd6 *R/fitGLMM.R
b9111cc9d9d16e719bdd930321ceb897 *R/geneProgramDrivers.R
4a81dca3b2c503a2cea9cb929a027955 *R/geneProgramScoring.R
b61832573cce39cc5280a30d255f17c7 *R/geneProgramSignificance.R
ca9161cdf09113d0cb2206bd3b997435 *R/getFittedValues.R
445037b8218ac687cb5774f733d68919 *R/getKnotDist.R
96dc47ff7f6dc7f74d174b9b749f27fe *R/getResultsDE.R
83277128ceffeb71ff0d8c562d8c77c3 *R/marge2.R
8afc7658ea06145d18100fee2b8dab5a *R/max_span.R
7943cada8456e3d624759cb43606c186 *R/min_span.R
5b02d45dff18a71be6b160b48af5977a *R/modelLRT.R
104a78bef66fbb2c32463bcc24d796a8 *R/nbGAM.R
9286013f50be72f65b6c3b1378731cf3 *R/npConvolve.R
e59db557c720b7f16d0dea6d81cad415 *R/plotClusteredGenes.R
57265de5e5a887f541b5e7b9117e3401 *R/plotModelCoefs.R
02873696738052fe5f5eb6e28d0963b0 *R/plotModels.R
17f19ecd1849d23d0ff9dda46d955ec0 *R/pullMARGESummary.R
39f916a224381044dbc210defc978ca3 *R/pullNullSummary.R
1ef10b207b26b77426b01deaf908947b *R/scLANE-package.R
ab3ecb1aa8fe51b507f61a6a1a764477 *R/scoreTestGEE.R
303a33e8accff6d818e1c0cc8befe80d *R/score_fun_gee.R
cf5cdb93411519d0c068e5dcb4b4a698 *R/score_fun_glm.R
99010f471755428e4770b1564ae6478e *R/smoothedCountsMatrix.R
5ded890a95979a5010c57a0e1313e510 *R/sortGenesHeatmap.R
676c038bee9332e5636c7591cb46188a *R/sortObservations.R
4f13648538c7818db1fb69f845d06b48 *R/stat_out.R
d4f67bf57e3678c8c8e7ac577b9fd197 *R/stat_out_score_gee_null.R
011e28421f04e418557cc740da0dc1fd *R/stat_out_score_glm_null.R
0503af55786d5cf2104a4c1f19289d62 *R/stripGLM.R
35a4683fa68b511e9130491ae3de8e66 *R/summarizeModel.R
a65e9ef463ab95d76afdf2fa0d34294d *R/summary.R
20f7734fc23d379b98e2c48afa78f4aa *R/testDynamic.R
128e381684e387bfc1ce70eaf599140c *R/testSlope.R
d7a99470798f12d511382cdae932f542 *R/theme_scLANE.R
97b443f79314484b0d05f3a6404a0289 *R/tp1.R
37f2f1806242392131558a73f8b0051a *R/tp2.R
84daffa411abbb6c50f4599f426c9c13 *R/waldTestGEE.R
d3700305bcb4e9203ae24530af46784a *R/zzz.r
ee2e6e7cb1e0a732d6009803730f83cb *README.md
61c4ed95d87890bf5330e173911a63cd *build/vignette.rds
6cf4a95926810c1e54806777c2a1d6b8 *data/datalist
e1b5eb8fc948c1afae5bfe1f496b93b1 *data/scLANE_models.rda
e3233369d77a7873c5a1c2069d6d7489 *data/sim_counts.rda
23bfee9ff68a63e679b9ac03313fe9c5 *data/sim_pseudotime.rda
5acb28dc624bcb090b6b3c97a584904d *inst/CITATION
bdea32301bed84f4d7d0511b2527b49c *inst/doc/scLANE.R
675cad5d09254ad84715e59ec1663349 *inst/doc/scLANE.Rmd
219e1bd1f237e0b6c0c1835e006835e9 *inst/doc/scLANE.html
5782b1553ec85a4f4950a983e7de869b *man/backward_sel_WIC.Rd
4eaffa7223d85283d77d1c62c3ad4f72 *man/biasCorrectGEE.Rd
29ba32456e6e710e2ebed0dba7f099b7 *man/bootstrapRandomEffects.Rd
ab03bf289cdaa29d36be308ef028c5ff *man/chooseCandidateGenes.Rd
6e7bc29d69123cbb2e5fe3340db8c27c *man/clusterGenes.Rd
db2bea3bb2cec61790c05f00b844fe74 *man/createCellOffset.Rd
f62072a5775d3b1d46359e667ca3bc71 *man/createSlopeTestData.Rd
53a6909d8d455dbe6f8806bf747a76ef *man/embedGenes.Rd
0e89b0a2b67f6992bb3423d98e7a1574 *man/enrichDynamicGenes.Rd
e859f3f383c9ac7256bef49e9ec311a5 *man/extractBreakpoints.Rd
20e0b44d9e2f5983f8bc29366580d130 *man/fitGLMM.Rd
c4805fbdca33432a8e8e2814aaa78779 *man/geneProgramDrivers.Rd
ca4b36d027754987a1da2b78d99986f4 *man/geneProgramScoring.Rd
45638e994e8f71862c841c16f5a2fa35 *man/geneProgramSignificance.Rd
d4495cc7e4366d8453fd7bed0218c2d9 *man/getFittedValues.Rd
9330e7b7212e5afd61e863f980494604 *man/getKnotDist.Rd
cc89520cb4efa838695241d348f96a0c *man/getResultsDE.Rd
2be1cdc643f26344b2ea07feb1db031f *man/marge2.Rd
2a7fe1ff3394835b08b796430df55b1b *man/max_span.Rd
8bfd85ad5de4fe26145b6dd3a897443a *man/min_span.Rd
748d26d35d8d66a22c7bd7ed945add73 *man/modelLRT.Rd
ba722e9e34b0567a73e44666d47ba6b1 *man/nbGAM.Rd
8abd4ed4753a4ee40b413e17bd14f181 *man/npConvolve.Rd
1953c409689cb285121db4dda865cf8c *man/plotClusteredGenes.Rd
4b5a57edaad81ba9e8f9a620bce48fbc *man/plotModelCoefs.Rd
3e37ab79b24ee18efc0cf233ec892c46 *man/plotModels.Rd
354d4eeba7c0661d06ad16490245555f *man/print.summary.scLANE.Rd
a8f8f8341bf9bf65992c3167c634e748 *man/pullMARGESummary.Rd
bccc47482b2db93740d4b0c1ba0d9956 *man/pullNullSummary.Rd
4bb979c93b40ca83ec35da482a138915 *man/scLANE_models.Rd
cef9fbcc4763e1e722abf70e628519e5 *man/scoreTestGEE.Rd
5c961b27ba321d4d6ee094693248240b *man/score_fun_gee.Rd
04d389edb07ff2e2b1530466b604fb56 *man/score_fun_glm.Rd
7f5ff5186cf280759a217e00e68e2ff7 *man/sim_counts.Rd
05187839b84cf4db16f2cd5e0dc0d329 *man/sim_pseudotime.Rd
32ac29d10411db01c35cb7d3ceb34c9f *man/smoothedCountsMatrix.Rd
bf50362fb23a8adc3db517cc57ac6aff *man/sortGenesHeatmap.Rd
8d0edfb9cab3c54a3af339249e3ce289 *man/sortObservations.Rd
adc852cc78f9d2657b2effc8d3421dc1 *man/stat_out.Rd
edaa1d8831b49721bb29ddbfd56467cd *man/stat_out_score_gee_null.Rd
a138e9bb473c5d5f5dcc214fa8888537 *man/stat_out_score_glm_null.Rd
51fd1c4d3082e1dc116919a0c0a68eb6 *man/stripGLM.Rd
1ed30b9a47a26c0ad55916fedd383faf *man/summarizeModel.Rd
6e920092a4017c87311fed913ca3fe3f *man/summary.scLANE.Rd
e828c1f8de7a6281e3decb62771be3e4 *man/testDynamic.Rd
ca7c77267f0790d5fe2084be35bab7c9 *man/testSlope.Rd
4dd0969a33b0572d6c3b5536906f0bf4 *man/theme_scLANE.Rd
2c675b4cce78c61e922d68d14a611de6 *man/tp1.Rd
226a8e962e3c8c8fd5eb4e6c8f626bdb *man/tp2.Rd
480a06682558775012a24e0fd9947091 *man/waldTestGEE.Rd
d341102df9e8f38a322831b9c58708ac *src/RcppExports.cpp
19b32612925b3bf4db7bda2962387680 *src/eigenMapInvert.cpp
bab1f6d0ed5477b1196c228ea0488fb6 *src/eigenMapMatMult.cpp
4f5697964562582a9dcb85d578bc3250 *src/eigenMapPseudoInverse.cpp
b61601eeeb66991599552cad8b0c182d *tests/testthat.R
6377192b02f885a835df86ed4d71aace *tests/testthat/test_scLANE.R
675cad5d09254ad84715e59ec1663349 *vignettes/scLANE.Rmd
