88f48bec0330069ac04c96a63b02c6c5 *DESCRIPTION
1ebbd3e34237af26da5dc08a4e440464 *LICENSE
c95b7785c886788f33e0629551a4c6d7 *NAMESPACE
652ebb5ba2582e9658bea7d6bd5eacd4 *NEWS.md
428365c719c80e60b8f463bc1f59eaf0 *R/FLOSS.R
3e70ebb0dfcb05c13f2601699d16968a *R/PAmotif.R
fe636346eec386925cbfe91cc799d016 *R/assignReadingFrame.R
cdfd660a73572770ae6bae3a189eec60 *R/codonBias.R
36d4b6cd50f38c52cb43f2d68e3471e5 *R/codonUsage.R
1c4dee35139209552a5db58e94105e1c *R/countReads.R
72c5f3e81ff5a7782e86089e883605a8 *R/coverageDepth.R
f45311f8c1a269ee51ed1be9d0342f54 *R/coverageRates.R
0f239df1f8e3c491077d87f1a7d8a8f1 *R/cvgd.R
71a750b102c6d495d75eb6521042c532 *R/estimatePsite.R
323d728836cf31f68426fa7e764abc2b *R/filterCDS.R
fa0787bac984dae701e591296bb93e86 *R/fixSeqlevelsStyle.R
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bb90436f09be411905c5b95640e37e8b *R/getFPKM.R
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537a5bd4f8c8f51b3df88afe246c00fd *R/plotTranscript.R
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4626453870e0f9b593fc832cfaf14ca5 *R/readsDistribution.R
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cc7b97cbb8440da8491eab765e47f2c0 *R/readsLenToKeep.R
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44fa0e4e566e5e1ab783e72d68e3d074 *R/summaryReadsLength.R
11e77bd0cbe8af1ffba773b67d157045 *R/translationalEfficiency.R
466ba872af7b76d118aabf2b117f9b89 *R/utilities.R
ea42d205b52313812dd1bf40d9fbf482 *README.md
143d161bf3100fcedbd05fe1e825478a *build/vignette.rds
8f565df7b132dcd4bb67536be378a41d *inst/doc/ribosomeProfilingQC.R
5b4110d456cea403cf0a74d557439c74 *inst/doc/ribosomeProfilingQC.Rmd
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7386047ee49714c9645272a9053f7259 *man/plotSpliceEvent.Rd
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7a10fa4a53f0ca5e157581c4e479488b *man/plotTranscript.Rd
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1527a3282eb67cf9f41d02389616817b *man/strandPlot.Rd
773aba1f1fc7a2b248eb1accb1ccbdda *man/summaryReadsLength.Rd
5495de3bd9ef91f25b2f23930411b3ca *man/translationalEfficiency.Rd
19ab56508561a1b86db2d9c87d8c571b *tests/runTests.R
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9a8bb39eeb6decc5ab760b54f172bf15 *vignettes/TSSdocking.png
b428887d2c1f9a906fdd63455ea6f773 *vignettes/activeExpression.jpg
9bbbac999cb77a84daabaf2fc5976587 *vignettes/bibliography.bib
2fcaf97a783a254afac21cc1d2e44b8c *vignettes/nature.csl
5b4110d456cea403cf0a74d557439c74 *vignettes/ribosomeProfilingQC.Rmd
6205f83dac3c7a3e5752d03820460f39 *vignettes/schematic.ribosome.prof.jpg
