bbfdfaa90073a7f9a6253312afd4cd6b *DESCRIPTION
e6e81d605aa497a752a8d8a9e0dc033f *NAMESPACE
28d283f8188ab2c2e2b2469631616367 *R/AllClasses.R
f8746d435016ad27588fbb9d4c91eeb4 *R/AllGenerics.R
ef8f857cfe16291582857e6b29188c03 *R/access-methods.R
9ff22a4b7b6fde04ffcc4e15c4e8992e *R/assocTest-methods.R
99aa8f8b7cdf9ea85c17c12a887d97d9 *R/c-methods.R
c4927dc022d4a064fe26037ed8e21a4c *R/coerce-methods.R
51254c76da761cf5c87367fd632bcd6b *R/computeKernel.R
4999d37b90b0db3b1c1d9f46d60b899e *R/computePvalues.R
5bceff540254469ac4fa10b12d6623b7 *R/computeWeights.R
62b55df9ad0339f195d09e342199d246 *R/filterResult-methods.R
821a9b776301acd74983a421c378e4b7 *R/genotypeMatrix-methods.R
e91bd80986cc8600a45b86c25f13b715 *R/inputChecks.R
034f541d1d54e69195037c40ca17ae67 *R/nullModel-methods.R
5b34879be4de316d4752312b65f74648 *R/p.adjust-methods.R
c38cc661fb27bfc20d28d0b58f54d47b *R/partitionRegions-methods.R
7b373c113c5c282e5f3071c78b85799b *R/plot-methods.R
b1846757322ffae75dacad7cefdb7a34 *R/print-methods.R
72a320896521f820c3b2403dd6be156c *R/qqplot-methods.R
2d46bb88b0b61a4e4189b6d56697fe8e *R/readGenotypeMatrix-methods.R
51f6a038c68170e299fa8931f043e396 *R/readRegionsFromBedFile.R
6aa20f10e811c44882038b97ab7b4e4a *R/readSampleNamesFromVcfHeader.R
830f5664025b314a8ca7a29cfaa2c0c6 *R/readVariantInfo-methods.R
b014b1d05427afb4b9e0a461b40a0f92 *R/resampling.R
8863edf709ce1cd2897d9a642fb411e6 *R/show-methods.R
a23ab777bf97fda029787d055f515bff *R/sort-methods.R
5f077ff5ddeae05bcc7a488fb042952e *R/split-methods.R
33561a1ad60df0ef79c9d1aaa883ac5f *R/summary-methods.R
81eb3ac29ce20642e197673e526a8bc4 *R/unmaskedRegions.R
6e5692c32706d20d5e6ecfeec88159de *R/weightFuncs.R
237e9f2d6d639e53405778bb3f4424a1 *R/weights-methods.R
c36a6e4732e29da22021aef5f9aaf396 *README.md
1bf18d9c216b8d95033f0bd2fe2906b2 *build/partial.rdb
1b0353505633f9cab22b488d29e9fbec *build/vignette.rds
68d6830386a8da76769d8dbb6a5f8edf *data/b36Unmasked.RData
8d8d8dc961193c873c9a4077a1a7bac2 *data/b37Unmasked.RData
98001147f4be789871e0ca5127e79020 *data/hg18Unmasked.RData
923e10f930b07f66c05bbaef1ee70ec1 *data/hg19Unmasked.RData
9c4eafd7a21c9c11e11ce56044878a74 *data/hg38Unmasked.RData
28e8707b4e22a5fdbefcb0c9debd6222 *data/hgA.RData
29cb7205cf9eb111fb69d2625785771c *inst/CITATION
3ea44a1c9ca36b1dc2b8ae239289bba5 *inst/COPYRIGHT
ae37ae192430b3ec1db62ca50081c48e *inst/NEWS
abb8da7240c1d3e7215e93cf61b12b8d *inst/doc/podkat.R
b99ff24ee718e91e5deaecf9d0069d93 *inst/doc/podkat.Rnw
1bbf519496be9b4f0b93db755acebb0f *inst/doc/podkat.pdf
9288b4b9609909c9ce761b42ef0e39b8 *inst/examples/HBA.bed
1e0cc1aadec5115c40b1aab4c0c4e52a *inst/examples/example1.vcf.gz
327c13f60e96607b4135453203fba623 *inst/examples/example1.vcf.gz.tbi
f2c98619e2264915fa0f3efb4378ecd4 *inst/examples/example1lin.csv
335bbc9452aabf760da12eda0fd6df4f *inst/examples/example1log.csv
3b36d84222770695a626d73f097c63d1 *man/AssocTestResult-class.Rd
d112e5bfe5583b88a5009d7912872587 *man/AssocTestResultRanges-class.Rd
5a7636b9deafc6bfe24fbd2823e5e464 *man/GenotypeMatrix-class.Rd
f9506d60e26b310a33bf8c39418d2c81 *man/NullModel-class.Rd
58d511e8dbce81179c8414762dad23df *man/VariantInfo-class.Rd
1d9ab020ed2c352675ad5f9fb18eae71 *man/assocTest-methods.Rd
3e425749e2a1d118e974e98f39a07f91 *man/computeKernel.Rd
cedef02be084461e7a3f77f3b4a7a9d3 *man/filterResult-methods.Rd
de98c4d810ed0664cabdb2d3284b9fb3 *man/genotypeMatrix-methods.Rd
1d90f1e7ced0e48a5cbc7feb763814c2 *man/hgA.Rd
f2e2cf6ac662cc99d82e3770bf7d440f *man/nullModel-methods.Rd
eda62d400d7cd886106261779072f260 *man/p.adjust-methods.Rd
4f4ca4cd1ad3dc57321c48f36f62843e *man/partitionRegions-methods.Rd
f70010ffd75fa60611cd369f29bbcf01 *man/plot-methods.Rd
a1792024771de1a04bdd3424bc147921 *man/podkat-package.Rd
72491575f7edb76216fc063bed7dad80 *man/print-methods.Rd
6ebd68242fc9d8ae8b474d74aa7083ad *man/qqplot-methods.Rd
3c806f3cf0527fb0a4c76e34956ff61a *man/readGenotypeMatrix-methods.Rd
63343072f69abee8677a2aac13e9bb90 *man/readRegionsFromBedFile.Rd
faa09dfdc5b3a16336957f28142ddc53 *man/readSampleNamesFromVcfHeader.Rd
f0c92d895fc01a74d49c07a352038a95 *man/readVariantInfo-methods.Rd
488fdd592a123a13755704b7ae51df0c *man/sort-methods.Rd
a1f7b76aaeb1d08d8190e32395d7e1eb *man/split-methods.Rd
5597bfd376783dcac530739685d4957e *man/unmasked-datasets.Rd
c0694582e2295591de52284b6246a59e *man/unmaskedRegions.Rd
ec9253796b46b9c1da590d9f0f5c5ab2 *man/weightFuncs.Rd
56c23de87e20a6655e6ad8d3f980739e *man/weights-methods.Rd
7b8d1c2c8939e293615971dd97729f83 *src/Makevars
5e0e35ad6e418e90ab212e59d96ed162 *src/R_init_podkat.cpp
ef15fe32c87ce5ed1a0d14f12975c4d0 *src/bernoulliExact.cpp
2ff15de3e3fe14a296e99bb48d1c3dbd *src/bernoulliExact.h
688cb911a514a2df8a2d601cb0489492 *src/checkAndFixGenotype.cpp
759084d68a8a4a1566c7b5dde7067dd6 *src/checkAndFixGenotype.h
a48903ec73546b683fdbd4f9f447f02c *src/cumMax.cpp
573e1902fddda2615957e6068ab2f742 *src/cumMax.h
7142e9ae26fb2159c2f63c4b3bea1ef4 *src/doubleMale.cpp
af5c6c7ad0035d23cc76d0eda26c7518 *src/doubleMale.h
91ffbd630bae968cae750226fddc71a5 *src/errCodes.h
eeed4ea19ecf63a0890d42aefb42f612 *src/kernels.cpp
ed20e1df07c41f7e9ea3458d6b8c2007 *src/kernels.h
df22fb1f8953be4b237ccb5f07048edb *src/pValues.cpp
9cc38c41a3bcbde0687f35bfcd7f142d *src/pValues.h
3276d14d6d5c71e9691b75a0046d4b72 *src/partitionRegions.cpp
729675910aba61ef57eeb9e958a9bd46 *src/partitionRegions.h
b46fe84a1e31943aad425a4cbfe21a1d *src/qfc.cpp
b3ee701c9bcbae70b850435725b143ba *src/qfc.h
8c76765191229cabe41e7963e3fb1ed9 *src/readGenotypeMatrix.cpp
decc3618068cd0fe4aa3a7aca4b66fbf *src/readGenotypeMatrix.h
44879c5a54437b633de5d415e423f3b3 *src/readVariantInfo.cpp
81249a05bb72e9ca7330af57405c44ea *src/readVariantInfo.h
de0b4840a09ebd7bfb7c77dd8b692652 *vignettes/PODKAT_example.pdf
dd8f15090f098f6859d0e2a71a12088c *vignettes/PODKAT_workflow.pdf
f98cf7c3962b457de5bc920364b7ce10 *vignettes/PosKernel.pdf
f0759474a70583c02fbedec088062cbc *vignettes/SKAT_example.pdf
194930f7317e78a9c4e58726f5f98989 *vignettes/betaWeights.pdf
0a5ace95db160c19df1673673a438b90 *vignettes/invSdWeights.pdf
de77cfbbb07260a77a2f868eea91b1b6 *vignettes/logisticWeights.pdf
b99ff24ee718e91e5deaecf9d0069d93 *vignettes/podkat.Rnw
0a5a7cb02ced0783bc644e601b48c8f6 *vignettes/ubmanual.cls
