d1a34355a4a599c0c635da3dbe488657 *DESCRIPTION
eca0d333361e44b5841a6252a7be4d1a *LICENSE
dbf78ce00bc1b19afc2aa410694de247 *NAMESPACE
deabe49144ecf84004649afaf1a27e45 *NEWS.md
5f2310fc0c1d5761e2db0068cdc11b46 *R/RcppExports.R
1801877c0b65c1fe9738a58e86ae1fa2 *R/annoDomains.R
0c0d404c96d67ebd9bee007ddd9463e2 *R/annoGenomeLabel.R
ff8305d37b571f432ae3cf82d9f18b53 *R/annoHeatmapLegend.R
77ec44a9481db7b548a7b5e8c5290ed8 *R/annoHighlight.R
42c7431a96489d4413ee82fa1d1f5eee *R/annoPixels.R
64d3bee66bdb65ec24e1a41e49c5a42e *R/annoSegments.R
93a71c03d8d312a14a717c4b45ce3bf9 *R/annoText.R
25e804dd4aa7ef2aa813c789b3781491 *R/annoXaxis.R
58d867289d01bb0f7db19c48648aa851 *R/annoYaxis.R
61167f3c0b146b63bf177779bb9f0512 *R/annoZoomLines.R
0f1ab905f4f1a547fe530850bafc539a *R/assembly.R
7fe5fc89f79f877be9837f36cc4518c7 *R/assemblyFunctions.R
c7524d3c8824993de8eb538f1849a79d *R/colorby.R
de9ff3a208e03d6e5b1ec7ee2f6d23b5 *R/defaultPackages.R
1d65995dfcaed8150a5270b01da3af1e *R/genomes.R
d47ab523b6c6122739f6d275eeec7d56 *R/getExons.R
f6982da93bd5a123d314bdda441b9664 *R/hicFunctions.R
cce6401c575566b7e0c4a96888952ef4 *R/mapColors.R
74c12bf31a3f460b7b74f37a85c24975 *R/pageCreate.R
9c1cbe7c81a8376f04a0e1b4a52bba01 *R/pageGuideHide.R
92ebe2fe13c600f2cd929be48d6626e5 *R/pageGuideHorizontal.R
79326799af5a784dca2f8757697ecb70 *R/pageGuideShow.R
b664f609e107368ca68ce2491c39c385 *R/pageGuideVertical.R
7081e905a36272ec47958ba915e3d6a7 *R/pageLayout.R
c943d25d65ff79c4dacde7e63511c420 *R/pagePlotPlace.R
68f0252c43a56309e4fb9de21c4408c6 *R/pagePlotRemove.R
fb33b791971ebe7ada232ae7cdbd663e *R/parameterFunctions.R
6a9b15ee2007646e0b9388e52e1b00fc *R/pgEnv.R
0393bb89b44857e6aadc8b3e545ff3a2 *R/pgParams.R
0813672b27d41f2b371c1bf724995ba9 *R/placementFunctions.R
3657915454de667ec32ca690be9c4dca *R/plotBase.R
8723a85c0235cbc48cdc277b3229300f *R/plotCircle.R
d955ef9121823191b449ae0fa9c63354 *R/plotGG.R
b7a1f1cac5535044cdfd94e98355af82 *R/plotGenes.R
84837f7151a029fc5bb96b5f1e898ccc *R/plotGenomeLabel.R
51a29434835bf7336ea922fa5e9abb06 *R/plotHicRectangle.R
eea50cc7f56e945bebce47119dcd5980 *R/plotHicSquare.R
9a77f800e2e27933b237eef0f3ee01c9 *R/plotHicTriangle.R
5d6848648308a00fcaca63bb65c2176e *R/plotIdeogram.R
1d0435d3db72af1cb0af664c4d97ef13 *R/plotLegend.R
6fc94893fd37f89f3a6e443111286896 *R/plotManhattan.R
cc5209b2b681d8d9cd75565a230f6c78 *R/plotMultiSignal.R
7679205128b0ac911245cc60b7bf19d4 *R/plotPairs.R
f03f047bf0e2cacddb318e3edb7d33d8 *R/plotPairsArches.R
cfe2be1df2a637fa510b760bf0dd3dd6 *R/plotPolygon.R
e77339c1ba80d83e6986bc3378edc137 *R/plotRanges.R
336aafde0508b9fdfa5df2a6d85ad873 *R/plotRaster.R
75aef07e35625a0f53c22f9e91be85f8 *R/plotRect.R
c9690a9525c356ac560d775b90f01f61 *R/plotSegments.R
c96449a15991bc64dbc7496b8b72d2e5 *R/plotSignal.R
c04c73f83e0fca758c525ca207265291 *R/plotText.R
813e5a3b8dd43d57748cac4686c0db25 *R/plotTranscripts.R
0939b237dffb875a2bf0978c72f8b644 *R/plotgardener.R
767ef34e09404742e8dd59cbac9143f8 *R/readBigwig.R
3da5f29b91d9189a1a8594d5c9225b38 *R/readCool.R
3ca10356cb8d66966d90e1d97c22ab6d *R/readHic.R
80c81f4e36683d2e066821057a595950 *R/readingFunctions.R
760223508c96c444cb23cabd638b7d67 *R/sysdata.rda
86fe9515cd554575df6714c29ac920b3 *R/viewportFunctions.R
1c711ba006f4fd4ee0080a0ae6a6b81b *R/zzz.R
d82b6149ba42e77bbcabf51df2d486cb *README.md
0f47a17960053bf67bd463a75a5531cc *build/vignette.rds
2475f40c673103c87f3794aa9126def6 *inst/CITATION
2ad35e7a5d532ed4499e769add48ec9a *inst/doc/introduction_to_plotgardener.R
b7c66eba831691593b67ac8497b79f10 *inst/doc/introduction_to_plotgardener.Rmd
157d6bbd159e4599b23148b97559838d *inst/doc/introduction_to_plotgardener.html
c8708c7ae9f1ccfd893ee01efdf0ac51 *inst/extdata/proximanova-regitalic.otf
bf9f5d50c1b928ff21436517a1a95ad9 *inst/extdata/proximanova-regular.otf
f14eee643541cf03a10f26c944cc29f5 *inst/extdata/proximanova-semibold.otf
909182496548f832840b6c43ef4fb5f7 *inst/images/Rlogo.png
6254845f9aff6debfe1924c89cac8817 *inst/images/pg-gnome-hole-shadow.png
7434950d18c69625a016845562f3295f *inst/images/pg-wordmark.png
332c9da6298d3c50e62de318b0f9c595 *inst/script/fonts.R
3fd72178bf11838b0e5ecc179ba18bd9 *man/annoDomains.Rd
86ef87ef8ff0af7c7fb6f8d9085f44aa *man/annoGenomeLabel.Rd
dff5f470a41387a4e02a34e457ddae26 *man/annoHeatmapLegend.Rd
29fb421016dab3b4f0dca10322521f36 *man/annoHighlight.Rd
0acefe9e50be734772757e079db7556e *man/annoPixels.Rd
87ae5dd8f6382d40d5abcfaf95fa1c4f *man/annoSegments.Rd
f742e722cebc2eb0706c684d7b37ebd7 *man/annoText.Rd
e67025c4b1729daa35d2bcd6493373ea *man/annoXaxis.Rd
05958db66a5d2e8751e72f240b306970 *man/annoYaxis.Rd
ce67c707f96e5e74996de1737349faae *man/annoZoomLines.Rd
34f29442836275736be815a1b4a4c4b5 *man/assembly.Rd
7bdf34de5a080d20bebb807f1ded54c5 *man/c.Rd
323968e112b3760e7bc203fb46950f52 *man/calcSignalRange.Rd
8e35722f432cd214638efe3484c76db2 *man/colorby.Rd
c488ca6f61794792d5440b023b342dac *man/defaultPackages.Rd
82aaf6e7d265ec11b4480e67d21f5ae6 *man/dot-checkCool.Rd
af64e6cc530faa57826a014c9eac65cf *man/dot-checkCoolErrors.Rd
2b510e937506268c4e1cb9fc55d49804 *man/dot-coolAutoResolution.Rd
da5e01be82c2b9d871b7e8bb5c08507d *man/dot-coolRegion.Rd
fcaa56be831147a35e47cc2a9fbfb0f4 *man/dot-pullBinChunks.Rd
257f5b3dc0ace88722041d856e1f686e *man/figures/homePage-1.png
1125f4b35515291d1cbb8bbced821527 *man/figures/icon.png
1c0f5ac9ccc6dd2f3c4142a7b16bc70d *man/figures/logo.png
1976cf0498a4b1337211831b3c4645c1 *man/figures/pg-hex-text.png
7434950d18c69625a016845562f3295f *man/figures/pg-wordmark.png
e743db254437ec77ff968915505366f3 *man/genomes.Rd
e395d140800085838d07d254513518cf *man/mapColors.Rd
111bd641f530d851ba0613476765f5df *man/pageCreate.Rd
76835a084782e1acd4f1a200b936cce2 *man/pageGuideHide.Rd
4edab4551be82a076ef4a26b553054e0 *man/pageGuideHorizontal.Rd
d4b215c1474749000b3d55d86d02123a *man/pageGuideShow.Rd
5359b44ce971b47bac1f03b5b255b85d *man/pageGuideVertical.Rd
92c33c12fe97c33d850180a17ff3877c *man/pageLayoutCol.Rd
4512027c74aefc48e2870cd44feeb7d5 *man/pageLayoutRow.Rd
1e4849ba9076e9c5444149b6392e28a8 *man/pagePlotPlace.Rd
e6d563ba7e6c2c48c5086be757827827 *man/pagePlotRemove.Rd
08aa3c5e1ef34aae30446e8ee7176307 *man/pgParams.Rd
ae4bb7345fc5567c6ec63680092a367a *man/plotCircle.Rd
f623e2eb95d327f09749b5ee98e72222 *man/plotGG.Rd
9cae6876525ba7dbfa4825a3d76edac0 *man/plotGenes.Rd
7d9603224c4e495dc0ba7c863ff0e86c *man/plotGenomeLabel.Rd
b22b57b27762c03be68eb0608415c528 *man/plotHicRectangle.Rd
3d6543041d7ef0c1e0b397fcb73b7388 *man/plotHicSquare.Rd
bb7b20eb630caf23bf636cae31d638cf *man/plotHicTriangle.Rd
07c1002256cfbcb2315e1105708a4764 *man/plotIdeogram.Rd
8566f2636db2595c5572371c89d04536 *man/plotLegend.Rd
d7a9d00fa24c02ba4c3ad0140cb7dc4a *man/plotManhattan.Rd
82cd1e16335a0b0b277e3c2408e0fc43 *man/plotMultiSignal.Rd
431dea5e97de6f71eb4421a24e1ce956 *man/plotPairs.Rd
593ac728ac2738a80790bdcecbd484bb *man/plotPairsArches.Rd
9ddc21b5d655c734105bb02ef2863cc4 *man/plotPolygon.Rd
80d74735ef5d5540f9de1411d0e39808 *man/plotRanges.Rd
1b2b183370a4221a643be62439de54f4 *man/plotRaster.Rd
d04cdef936865f7c50e5f3475e56af6d *man/plotRect.Rd
662e04969288ad9b4c72b03a6ef39645 *man/plotSegments.Rd
bb31c093789fea68ae4b46a81bb391aa *man/plotSignal.Rd
c3eb24fb81aee740c0a8bd3d041a1558 *man/plotText.Rd
53e46fb6d00903591e85f3216e00e89b *man/plotTranscripts.Rd
0346f240e1d862c4fd04c8c33fdb910b *man/plotgardener.Rd
c4f8b7c3d246377aa5cc0df35cf43b22 *man/readBigwig.Rd
dd2ed62042ab11227e49e29f04601209 *man/readCool.Rd
0885179b3e5c8acbd3669769ed3998c6 *man/readCoolBpResolutions.Rd
8999e6c179c0458b7b675a6aeda03491 *man/readCoolChroms.Rd
8cd02c78fdc08cddcb91e294285f4ff1 *man/readCoolNorms.Rd
3396e801c9fa68b5ffe792646c2098e7 *man/readHic.Rd
f669df0c279f797c78fb8570465e1ee1 *src/RcppExports.cpp
80e4df3c6661b5afa5d6788988f0f85a *src/checkRow.cpp
1fc054482664e1bc93366a14c5456bf5 *src/rebinBigwig.cpp
c2b9ee0fa9cdea40affcdf2f3d2a7d54 *tests/testthat.R
9206fa44e5e81a90c34a5b6c6832858a *tests/testthat/test-assemblyFunctions.R
7595acbadff896bd1155e644461d3ebb *tests/testthat/test-colorby.R
6266f2fffcc7cb421aef2c9722b5fb9b *tests/testthat/test-hicFunctions.R
a7d314e03bec3034849600362d077e8d *tests/testthat/test-parameterFunctions.R
70fbf1ddf9dfa7ee8dcd03a7632ff1ae *tests/testthat/test-pgParams.R
714aa83057e351f2bbf665c7ba219df6 *tests/testthat/test-placementFunctions.R
a925468b5df61f42afa63d84f60a62f9 *tests/testthat/test-plotting.R
c84f1758a7819760e22c9ce5fd6ab448 *tests/testthat/test-readingFunctions.R
86b0f8f43b3896e212b7bf61f3b6fcd2 *tests/testthat/test-signalFunctions.R
a57c6834beaa2e4c2570389d91e35240 *tests/testthat/test-transcriptFilter.R
ca0cdd24858c7e45a486f34ef8c6555e *tests/testthat/test-viewports.R
b7fce9b0e2449309b4b3ce8991300119 *vignettes/guides/aesthetics.Rmd
bc06c62b8771b9cf198f459256b7e6d9 *vignettes/guides/annotations.Rmd
92d62808f37dcd0735b6093567da22b8 *vignettes/guides/bioconductor_integration.Rmd
f884991b67706a171b3caf37c2925343 *vignettes/guides/ideograms_and_shapes.Rmd
a07c37ddeaf9bed1641b663d186f8f3a *vignettes/guides/incorporating_ggplots.Rmd
d584e961c833382a9ca76cbea035c1cd *vignettes/guides/our_philosophy.Rmd
a3c84d7a494304b14f88bf56016c9080 *vignettes/guides/plotgardener_meta_functions.Rmd
bf6298904fa78051d27f9599cc1777e6 *vignettes/guides/plotgardener_page.Rmd
6716013a50ca9368a936ec0e8c33e844 *vignettes/guides/plotting_multiomic_data.Rmd
366c6a70aa7d55fef28c69b42c289f27 *vignettes/guides/reading_data_for_plotgardener.Rmd
b7c66eba831691593b67ac8497b79f10 *vignettes/introduction_to_plotgardener.Rmd
