44cfbfce6d22146dddf27b12526ad00c *ChangeLog
1ddc05064c527c87216470198c416ae2 *DESCRIPTION
bab149a784dafad5f1168a335a79b633 *NAMESPACE
6af4305bb7fc6766f006d07555ffe9c1 *R/ClassDefinitions.R
db05424d33e460224b074c742790e549 *R/epheno.R
0ba052148a180bea9df14e415bfff692 *R/epheno2html.R
3178fe7b39db8db92e556a44831b3d9f *R/epheno_plots.R
125bd01a62a1a00b672bfc34ec3d081c *R/eset2genelevel.R
7d71c780b7744d2b27cd9112eff98e97 *R/findCopyNumber.R
66d48c124dd70b22c0af016aa26f4b1f *R/getGeneSet.R
08bf468ddb4a0d4eddb2966672a9e63f *R/gsea.R
057c506ea35f600185bce903b72fb9da *R/gsea2html.R
d2497661e68cad94d964264ffaa11684 *R/heatmapPhenoTest.R
31936830616ca92db94c0dcdfcdde001 *R/pca.R
b2472df65b70f13c6ca7151878609c39 *R/smoothCoxph.R
d5645d81ad97cce28242a77ad63c8737 *R/write.html.R
0004f0a9cbed2550e476ae73b693cdb7 *build/vignette.rds
c7b2dfd6366b065c4e72b88ea5475d02 *data/epheno.RData
59a5e11528516c913b605fe83e56ec03 *data/eset.RData
c43335e891767b4c9ad2ed5908c05477 *data/eset.genelevel.RData
4e0a8cf26d62303411b07c1f57dcfd4d *inst/doc/phenoTest.R
8f271d8d4783cb5f39cae270d83c5ae2 *inst/doc/phenoTest.Rnw
9231874938c7b69832eb2d015cd2b2d9 *inst/doc/phenoTest.pdf
16144e566b5a59a40c18dc98679bc344 *inst/javascript/dragtable.js
b103eb1265a62f9f6a7ebf7519891ce7 *inst/javascript/sorttable.js
29fc3f72e5f6d6e9e8d1202d9d2bbbd0 *man/ClusterPhenoTest.Rd
b31847bd3c615094b81d5c40bae125c2 *man/ExpressionPhenoTest.Rd
f9522f44c67bd8ad936201f6a9bc783b *man/barplotSignatures-methods.Rd
9a199a37bbdb9a814c0c05a60f6601bf *man/barplotSignifSignatures-methods.Rd
51bcffe007f394ff4da659c0eea584fb *man/epheno-class.Rd
e47040529269757a49503c1251d1762e *man/epheno.Rd
bd02b3ac4821f12bf2cd90beebab5896 *man/epheno2html.Rd
d34b76f22537025521075b3449d6e9c2 *man/ephenoGetters.Rd
d25c3fef2a0789d5116a9d481ffe8d57 *man/eset.Rd
d3bd2d973b4fc7ce2b3443d732930a8a *man/eset.genelevel.Rd
cc512804241b5621c5b97e39d9fddcd6 *man/eset2genelevel.Rd
e0904d0bf769cf5e3e94186bb3b0ad41 *man/export2CSV-methods.Rd
451c9dedcc5a385ff92caacfcbe7e467 *man/export2CSV.Rd
90b443f38755677e0d3d44d4f03c331c *man/findCopyNumber.Rd
2c91ebb53f088bd26f8f6a8ea4b39f64 *man/genesInArea.Rd
eb92a8041a6e6df8075e648751345a26 *man/getEsPositions.Rd
c076e9ba435566c00ebba14202d1ad80 *man/getGseaSignatures.Rd
78d73936037236d683525ddda5ed6fba *man/getVars2test-methods.Rd
57d2b1141e0fdae95f5b9bc6502229e2 *man/getVars2test.Rd
f2bd3260243ce6eab68637fa0a1c8e29 *man/gsea.Rd
f849f36d01b9066b689fe24010570cc8 *man/gsea.subset.Rd
b0e7a6457858ae7d32e05f3178c2d7bc *man/gsea2html.Rd
0a7214d201cd6eb2f037558b224bb013 *man/gseaData-class.Rd
0c6283032ecee7e254d6f9b8dcf8f3fd *man/gseaSignatures-class.Rd
b1147bb413f2e9b56aad54dd3ef65724 *man/gseaSignatures-methods.Rd
1195f4e711a87d5549a53dffc2941619 *man/gseaSignatures.Rd
9c94645af0386488977e49311646449c *man/gseaSignaturesSign-class.Rd
8c28976196476c68aacbe11172741e0d *man/gseaSignaturesVar-class.Rd
f90ede2f96ddc376e8705d77f4f836df *man/gseaSignificance.Rd
4da7860c03322924fcd6ba79a92f75d9 *man/gseaSignificanceSign-class.Rd
c5a336230d13caa3569411a5dccc7be7 *man/gseaSignificanceVar-class.Rd
4cde43be8aeeee8472183e772ad97313 *man/heatmapPhenoTest-methods.Rd
a366ab75faa71d3961370572612032e9 *man/heatmapPhenoTest.Rd
aa720c9ffbc10694e4de78a64d60e0d2 *man/pAdjust-methods.Rd
e0e670087a558d95636c35c014b0e2ef *man/pAdjust.Rd
0c51a7cbb13a569a603977a56d3f7292 *man/pca.Rd
a178234ada4871b8bb8bfc83cd1cf70a *man/phenoTest-package.Rd
8990c244513232addcfd5c8f54169495 *man/plot.gsea.Rd
758543a5cf7864c1cf27fa73d7d3cd15 *man/plot.gseaSignatures.Rd
b07974179f9934d5f749056fb0d6e029 *man/plots4epheno.Rd
9e8c676391bc4f5fe24b6e94b943e472 *man/show-methods.Rd
0908cfb5e6f83b06f173af78faed1da5 *man/smoothCoxph.Rd
8c37f9b7fcc4a72145340bc44b44250b *man/summary.gsea.Rd
ddc0076d40b0c6b429236aec9afe8037 *man/summary.gseaSignificance.Rd
57698a516d42cf2a648ef4a795b65499 *man/write.html.Rd
8f271d8d4783cb5f39cae270d83c5ae2 *vignettes/phenoTest.Rnw
c7869e16258ce96d7009c96145b09a48 *vignettes/references.bib
