975b7430063567693ed803fe2fcd851d *DESCRIPTION
92fb3d5f5f749d11d4ea8a16c5406a8f *NAMESPACE
d49b1d06bee5acb0816c4479c1443de3 *NEWS
5defd745687729e0850b106fdba4f5a9 *R/00_imports.R
92b51b322daccae0fc70484759fe2ba7 *R/01_assert.R
497ad9ecb116c8e8ca5f36153cf000a6 *R/02_utilities.R
19a587f7fa8110f142c32b2aa76f66e3 *R/03_plot.R
a78297ef954a4528cecb58ef28d44c12 *R/04_bed_to_granges.R
12a646fade725d1026d5203c492bd6e9 *R/05_manipulate_ranges.R
b0ef22629715fb69e5cc43443d535d40 *R/06_find_primespacers.R
19ee5683bf55f4d5d3b892ed3e4dc206 *R/06_find_spacers.R
ec281b2fc3d73cba3e19865fc21cee73 *R/07_count_offtargets.R
3436577c1f5864a24dba331c6696999c *R/08_score_ontargets.R
cbf88c9947e071de609fa3650a48ea55 *R/09_write_ranges.R
a30130c16c277fd1c857c2dd02c611dd *README.md
b16efc2d2c012fd8274888f6b6b91aa4 *build/vignette.rds
580ffce7be68a02ac874eb77d1a98720 *inst/CITATION
411c7b6883019a9865ac1b661e849692 *inst/doc/crispr_grna_design.R
fc14dd3c12b078d8c809eb00bf61dd46 *inst/doc/crispr_grna_design.Rmd
431f4723f4ac57d52ad3ff07a99dc550 *inst/doc/crispr_grna_design.html
56c6b6a1c67c18812aedc98c4dc2b181 *inst/doc/genome_arithmetics.R
714827de361a550732f88f6d4dd1d031 *inst/doc/genome_arithmetics.Rmd
384e18e35e66aecb00de9ce6a937ce6c *inst/doc/genome_arithmetics.html
6a612a75813d450818cd8843dae906ca *inst/doc/prime_editing.R
cf44188f15253ea241d291978f8fc8ac *inst/doc/prime_editing.Rmd
76c0de923a89dbff4d020707665875d7 *inst/doc/prime_editing.html
e9a8f98508fed6042c9808fb5571cd69 *inst/extdata/01_define_targets.png
cd73ab77025e8e78d705dd57266b8474 *inst/extdata/02_transform.png
b33050820b5b09c91ca7dcf56a6c98aa *inst/extdata/03_find.png
caaf10eb04a0b51e0bc2b678992651e6 *inst/extdata/04_offtargets.png
b47210a3d61b29303675e94d185aa5d0 *inst/extdata/05_efficiency.png
cfa317e3b2b7651287b4739b4106f53e *inst/extdata/SRF.bed
bd6f01706b82520a8c0ed4e3ad71d752 *inst/extdata/SRF.ensembl
4f797553b70ab93db4ab1fe1c2fd2483 *inst/extdata/SRF.entrez
768a8bbe52f7b2b82b3593eeb3e86b41 *inst/extdata/crispr.png
e0ceddb84cd255cc22a71388e8c4dfe4 *inst/extdata/crispr.svg
d2a9be0e82ae9c896803eb0c30bf909a *inst/extdata/overview.png
e2f51d6992da20f0a4415988e721fdb5 *inst/extdata/path2256.png
740c349a23417ea21327fa99e47d979d *inst/extdata/pe.png
4f23b795ac6b7566799b4fed67d72e09 *inst/extdata/pe.svg
5ad170a3ffbcac1f438b64e53df12b87 *inst/extdata/readme_portrait.png
736f05bee2e35f6412463ccc406ad643 *inst/extdata/readme_portrait.pptx
f78736a308ca8597613a534d1c2b5733 *inst/scipts/00_filter_offtargetfree_sites.R
5f9f6e8807797292397b848464136b5f *inst/scipts/01_annotationhub_resources.R
113934bec333089eaee6a2e60c8bd7b8 *inst/scipts/02_pe_clinvar.R
d68da39ead979f7bfd4d0d569d1dac1e *inst/scipts/02_pe_coords_cftr.R
88c5c29317d8272126f60de7f55c4dcc *inst/scipts/02_pe_coords_hbb.R
f9256eaff4d39578acc5630f45cc7097 *inst/scipts/02_pe_coords_hexa.R
d274133d80bebed19412c7fba4a6aaf0 *inst/scipts/02_pe_coords_prnp.R
627d91ec7e0acda39d2855caaebee3da *inst/scipts/03_save_srf_genes.R
0e5ce3aced1dc8c722f023fc5a9a076c *inst/scipts/04_use_cases.R
0891f483ca4f0427b93e8f9a83b0aa89 *inst/scipts/05_pipeline_for_becnhmarking.R
3886de18156da1a874eb6ba2a642c556 *inst/scipts/06_validate_paralleltargeting.R
20066adcee9ddf91436e70a1e08c66bc *inst/scipts/06_validate_pe.R
b783e3d3484aa1c3b9f544e3db564f23 *inst/scipts/07_validate_brunello.R
e2618c698d8cbae6ea82b1166c49e7d6 *inst/scipts/08_genome_arithmetics_figure.R
3d87dd895a4433c71f4e8c8117d6c583 *inst/scipts/09_readme_fig.R
8f147d5a0278dee16b114fc6c21ca0bf *inst/scipts/10_compare_offtargetanalysis.R
1e127899b212e80148471488411effee *man/add_genome_matches.Rd
77d38a09f0cdc3246dee373e1f83f8cf *man/add_inverse_strand.Rd
5c9ecf86b5f13a080926b28ef7976a56 *man/add_seq.Rd
a740161be734fe9c54e3bd9742cd7d51 *man/add_target_matches.Rd
594915300f9889af4734716e34b9a663 *man/bed_to_granges.Rd
ec416377b245c8c33b8602044d25f696 *man/char_to_granges.Rd
d914a621c20b5f78d11288966bc4eab9 *man/double_flank.Rd
5458a00084b07610ab301c9d0da25708 *man/extend_for_pe.Rd
7509aae05814d2ada33e93956e62f33f *man/extend_pe_to_gg.Rd
928ee9f3e83733fd3245b1650f977cbd *man/extract_matchranges.Rd
b005171257ec0ed033d21258b82734af *man/extract_subranges.Rd
581bc815b5d7fb3e74f16fd1eadc471e *man/find_gg.Rd
8ded297a0a080e4f9944eca44999012a *man/find_primespacers.Rd
38cd06c612af8371d8bdc1528f9890b7 *man/find_spacers.Rd
39be5ad25e1b7f90da4e8bedebfb506a *man/genes_to_granges.Rd
cf7c1418f7ea5fb2672bfb13180b70b8 *man/gr2dt.Rd
672d5a6f1f439e192180ec64584e2a58 *man/has_been_indexed.Rd
a431fd47cefaceae24d9a0bca109411e *man/index_genome.Rd
427fb1f0689ce5945c56b2f28dbd2bdb *man/index_targets.Rd
5e0aaf36973ead95e7483560fa1bc584 *man/plot_intervals.Rd
a5b7cb899654c73b9089a880c453ef66 *man/plot_karyogram.Rd
3d4eebf70f35dfcfe74da86145884648 *man/score_ontargets.Rd
7c34df55b137deff9540ad236d8ec6e3 *man/up_flank.Rd
d820cfd6fd64719b6d5778a3c8b3d718 *man/write_ranges.Rd
17fb13ec281cabc8fffe05aa99c82eca *tests/testthat.R
7c394f14db31acdc89f948fc78011ade *tests/testthat/test_extend.R
e94eac0878e3ff867a7c7cb967f10444 *tests/testthat/test_flank.R
270ea754a16f2258b0b5709e6971076f *tests/testthat/test_read.R
fc14dd3c12b078d8c809eb00bf61dd46 *vignettes/crispr_grna_design.Rmd
714827de361a550732f88f6d4dd1d031 *vignettes/genome_arithmetics.Rmd
cf44188f15253ea241d291978f8fc8ac *vignettes/prime_editing.Rmd
