01c4e07ecf1d27f80e1d30f91becdc2a *DESCRIPTION
065fba87bab6eac9404afe7f07754550 *NAMESPACE
96614824c8a0c43065dd96bbc76c4ac9 *NEWS.md
ded2624f1500aaae7c0ca3ef59ebed19 *R/app.R
4686de74c88874a73c4fca4b4ad26245 *R/appHelpers.R
bdf0dbfe4065c7a86a363b69ab941617 *R/data.R
1c1aeee5266286a0bd235b1e55418a3e *R/initialOrder.R
40d3589d59797fef427556ae24bfc502 *R/ioHelpers.R
d487a0bf75d0c2cddb43cc4b2ad56f53 *R/preprocessSingleCell.R
7d4ff55e27fd857f64e5699970ddd5aa *R/preprocessSingleMolecule.R
88d83921d270ae598f412b59139959b4 *R/refinement.R
ae73e405ad42dcfd9515b3010ab64b8c *R/seqPlot.R
a7f21fdc51f0cd81c0a943997ed2db67 *R/server.R
b9bc0afa647b094b4bd5632373f84411 *R/summaryPlots.R
b4f52e20fefd6c154a6a976fe96ff9db *R/ui.R
6b9f4eca6904c935f1ac9e04085f8153 *README.md
be07cfa73baf6eaca62db84bad0b2ecf *build/vignette.rds
43c832223562f9006a29e0c4e0550870 *data/datalist
afa3f30f19442a0b29d6da0b00951774 *data/human_bm.RData
006f6cac5653c7afbe82ae78d9afc10f *data/mouse_bm.RData
b179bcaa0233f2a510f8a6d060fde2f0 *data/reads_sm.RData
5422ab2f5b357e29200d0b7dcf414f4d *data/ref_seq.RData
3d59af3961dd113739ba1847ef953893 *data/singlecell_subset.RData
62ecdb5023e57397451365d2d91f3ebc *data/singlemolecule_example.RData
9a3486f3e74aac48a819230d2d2b71ca *inst/CITATION
5aef6a302225d226f32c305c791b2da6 *inst/doc/methylScaper.R
a242754768b7b2dbbe965a31692c746d *inst/doc/methylScaper.Rmd
68a026b361414bd3dd6b81e833803d0e *inst/doc/methylScaper.html
0df43d88d136879c3f085cb860585404 *inst/extdata/reference.fa
a06d86eabe3203079fce79984c376188 *inst/extdata/seq_file.fasta
55016e181241710eb87c72603a000cff *inst/extdata/singlecell_subset.rds
344cbda0887503b4de8dea40acc4b739 *inst/extdata/singlemolecule_example.rds
20f18610b7eed475601c39be7d83d818 *inst/script/extdataOrigin.txt
52916644a0ffc287b2b5448e196d9965 *man/check_package.Rd
9837113841cfcd3706e844a3259fcd30 *man/forceReverse.Rd
10730ad43e390789024a1acdc532155f *man/human_bm.Rd
00208261b8c28a4480c9b8bbcdfb5e80 *man/initialOrder.Rd
ba13ef44d44bd65bc5bdd3e664947ffd *man/methyl_average_status.Rd
3496849fb391ecf6044507e6a563ef42 *man/methyl_percent_sites.Rd
dcd9cdb47016b51eb047bac12aa3b693 *man/methyl_proportion.Rd
604b61c7733105461c0baa5fd3e56d01 *man/methylscaper.Rd
3d39a4c969d1741d60fff14dc3a2d8b5 *man/mouse_bm.Rd
b8382dddbd232c882827825e8f369b8d *man/plotSequence.Rd
e323f67102a9825418dfd750c96da891 *man/prepSC.Rd
44d39a96b6936612be8d95a15f7cbab9 *man/reads_sm.Rd
545c5ef92b42197fe65178e34667e573 *man/ref_seq.Rd
df2fc5789a559a9deb286abd630d27f5 *man/refineFunction.Rd
89ab0eba74ab868f583df7bb88d9998e *man/reformatSCE.Rd
c1b69a20df6364ec389cc57354a225a9 *man/runAlign.Rd
3370d6293315a509440d150f3e4f396a *man/singlecell_subset.Rd
df87994e014a129cebbe66123e855779 *man/singlemolecule_example.Rd
6f4a6b0ee2baee38f62ccccc4791766a *man/subsetSC.Rd
a242754768b7b2dbbe965a31692c746d *vignettes/methylScaper.Rmd
deffc4aa6bfb4e9499024edec1dc3c20 *vignettes/process_sc.png
ce125f90fccaee83e2e00725dcbe0047 *vignettes/process_sm.png
6deddd313c8f762dca5c708bd0816247 *vignettes/sc.png
d73e15dbaa62ac0de422f24eac5385a2 *vignettes/sm.png
