706d11c53e13f748c4caf57f5eff0efe *DESCRIPTION
dc96401ffd5959d81ad6f3a385feab5f *NAMESPACE
b35e881dc1c9726385f42f343c62da4e *NEWS
5f58f0b40d83e9a2ad4a78aeaa8ab3e1 *R/AllClasses.R
50b01abe1710fc647cde869d42542ed0 *R/Allfunctions.R
35d4ae6dc8f6cdf3fab0a5a7a4e021e4 *R/BSdata-methods.R
c697af66d8c1744204f953bae11a6322 *R/BSdataSet-methods.R
8668488f3ce3bc812e329a70cf3147c8 *R/GEcollection-methods.R
27da4f6f90b9b8d929bbf8d28080c064 *R/GElist-methods.R
f65f0651f7f1a0b784a6e2d6c5ea4928 *R/zzz.R
f5717f2eafca81b3b465dfc285df4832 *build/vignette.rds
0ae6905435aaa263d7425ee20a9ed8c9 *exec/methinfo.pl
81df29f396c097babe30c5266069c709 *exec/pool_reads.py
f5422f73c66809fa6098b79a27cd6e19 *inst/CITATION
b3799fd11d7ca09eca9efdd79bf3df8f *inst/doc/methylPipe.R
e49cbb2641a4969e2f394709e0eb7bc7 *inst/doc/methylPipe.pdf
3d141a183566448722a4464c669d31f8 *inst/doc/methylPipe.rnw
3d31421bb2ba4f5eeb59c02b534ae6a1 *inst/extdata/DMRs.Rdata
4618aaaaf6b87ac51cb3046795c4d1cc *inst/extdata/GR_chr20.Rdata
51b3a14a8e6c6394dca18650624fa259 *inst/extdata/H1_chr20_CG_10k.txt
7965fef2bde8d6fe0b39774d67cbe889 *inst/extdata/H1_chr20_CG_10k_tabix_out.txt.gz
349107ad36f58989282b2f7652f18d02 *inst/extdata/H1_chr20_CG_10k_tabix_out.txt.gz.tbi
f34473e4c8f37b6b72167300a7ea0ea9 *inst/extdata/IMR90_chr20_CG_10k_tabix_out.txt.gz
b9b6506a0f9826580665922859616173 *inst/extdata/IMR90_chr20_CG_10k_tabix_out.txt.gz.tbi
470c422fff86ac77aa80b69f026bd47a *inst/extdata/gec.H1.Rdata
cc7adf54d9f867db25140dff94459057 *inst/extdata/gec.IMR90.Rdata
7a4f3b0b2478050da10a2205b0aa9991 *inst/extdata/test_methcall/methylPipe_ex.sam
402f7f69d98d0e4c3d8011752aa8f1f0 *inst/extdata/uncov_GR.Rdata
c694dadcf018faffeae48482c012b452 *man/BSdata-class.Rd
5bafe475025c15266c68b3f2098d6d67 *man/BSdataSet-class.Rd
66eb0db021af11c0969be62c74d648d1 *man/BSprepare.Rd
8429dcba833ead0b20929a63a6a578fd *man/GEcollection-class.Rd
924cc39b3adaa61f86e8b02dc1a3f1a9 *man/GElist-class.Rd
88037fc351c98f8fc7c2f4a8e9d0c05b *man/chiCombP.Rd
d694877149a3731c659135917dd56988 *man/consolidateDMRs.Rd
0c2e5aeee3358df38e3e1459f8482ef4 *man/extractBinGRanges.Rd
996672ed894535e6f8b420e6b5099aaf *man/findDMR.Rd
e3397344585a00170244a85cabc89c60 *man/findPMDs.Rd
2fddc41f746180a4351217e28536b36a *man/getCpos.Rd
f83a866a81bc4db3dd4f1653eaf464c9 *man/getCposDensity.Rd
1d4eb0fee83a40c5f191eaba736a6e27 *man/mCsmoothing.Rd
d2c19de2d208c89f8db9124f90b06eea *man/mapBSdata2GRanges.Rd
504852c4f56c879c4f90e9ab07b10833 *man/meth.call.Rd
19cb767827011c8e1e55edca56bd76a7 *man/methstats.Rd
0187981dca5d25f4f92af6010ff37c2e *man/methylPipe-package.Rd
c9eae4021ff15cb727cd03215eb6e44e *man/plotMeth.Rd
a419cbd3e84678b89120a42809b49783 *man/pool.reads.Rd
ae888f0f679f40f49fa0c5e276dd571f *man/process.hmc.Rd
e98e192503ad8bb3df9733a4846b86f1 *man/profileDNAmetBin.Rd
666e9db6cc1786cd28c7d1dd0e50691a *man/splitChrs.Rd
f56959a1bcba22492358b8f09f97d85d *man/tabixdata2GR.Rd
275660bfc9390d03f5d96e4a2716d54a *src/R_init_methylPipe.c
731935a3b97c51d0ddb5d6455bd1ce2a *src/binning.c
d18f328bb13b54754bd01c0156350a34 *src/binning.h
3d141a183566448722a4464c669d31f8 *vignettes/methylPipe.rnw
