ecdb8860550d8aa4eaee071342cd438f *DESCRIPTION
1d7d5192a2b34e8c981a725f71404613 *NAMESPACE
5952e06a9d208099b8f9a3041e704a14 *R/methylInheritance.R
4a26506a935541c90f62267690b1a209 *R/methylInheritanceInternalMethods.R
ba9814f351dfb63650251d85d49e0f97 *R/methylInheritanceMethods.R
dd03d69641ad88114a33654be8f45f3b *R/print.methylInheritanceAllResults.R
374570a622f33c82fae0758bf9c620bb *README.md
7600448f1ca4392bf9dd7837cb29958c *build/vignette.rds
cd5843b30414185bb53ad74fc604643d *data/demoForTransgenerationalAnalysis.RData
53e1e872ede5c844933a0c0e3078d293 *data/methylInheritanceResults.RData
a20ead6e2f4c57fd635836f5336788ea *data/samplesForTransgenerationalAnalysis.RData
38fc510cb1741640d4347f7d9e2cf90b *inst/CITATION
0a738ad14eecba13410094277ff5a0f0 *inst/NEWS
8ac46e3b5b54cf8720d91e66dd6b667d *inst/doc/methylInheritance.R
80a5e6f4628d118d70057170e1be727c *inst/doc/methylInheritance.Rmd
006a932a868c9848c73f8ced441b232a *inst/doc/methylInheritance.html
553bdd93f703f99f770e9e3d05399972 *inst/extdata/TEST/SITES/SITES_observed_results.RDS
3663dfbf45156a59d428721a28b6ea6a *inst/extdata/TEST/SITES/SITES_permutation_1.RDS
49e37f2772392e1de1aad377f8b5e2f4 *inst/extdata/TEST/SITES/SITES_permutation_2.RDS
bd3d9b38d076e5287a92574f42ff7b65 *inst/extdata/TEST/SITES/SITES_permutation_3.RDS
050cd9abd16224e301830c11e365a25c *inst/extdata/TEST/TILES/TILES_observed_results.RDS
d4a35bfdacd237585723be1b52d54888 *inst/extdata/TEST/TILES/TILES_permutation_1.RDS
1aa1cfac49d30c32f6ee8a93eeca47d5 *inst/extdata/TEST/TILES/TILES_permutation_2.RDS
cba2356fdf91f0905dee61a46d8b97c1 *inst/extdata/TEST/TILES/TILES_permutation_3.RDS
73b99c36f8485e8e5af6332ba45104eb *inst/extdata/TEST_01/observations/SITES/SITES_observed_results.RDS
4eda94e5f598ac6e63422327e2d16b1e *inst/extdata/TEST_01/permutations/SITES/SITES_permutation_1.RDS
0b5ec80c650b3e561cb273d729ef6668 *inst/extdata/TEST_01/permutations/SITES/SITES_permutation_10.RDS
18527f520d37d32dde7052d06c117778 *inst/extdata/TEST_01/permutations/SITES/SITES_permutation_2.RDS
0a2e2913be856c216ecadd9a0086f403 *inst/extdata/TEST_01/permutations/SITES/SITES_permutation_3.RDS
4100bec83ee09500f68af03937304a6e *inst/extdata/TEST_01/permutations/SITES/SITES_permutation_4.RDS
904c1c2a1f3beaf8b09e6a666f2ef2aa *inst/extdata/TEST_01/permutations/SITES/SITES_permutation_5.RDS
0cb11c2544dff83944a0ab75d6b6efda *inst/extdata/TEST_01/permutations/SITES/SITES_permutation_6.RDS
920066bde7d4d16e25da2872e904553c *inst/extdata/TEST_01/permutations/SITES/SITES_permutation_7.RDS
14606158b84a98ec75c010be56621d94 *inst/extdata/TEST_01/permutations/SITES/SITES_permutation_8.RDS
78fc8acd75b789b927065a9d300ebecc *inst/extdata/TEST_01/permutations/SITES/SITES_permutation_9.RDS
002023a36606afbd83788e33d88df685 *inst/extdata/methylObj_001.RDS
9e911b79f5e9ab76935c30d67816267f *inst/extdata/permutationResultsForSites.RDS
92eaa78ff715f7462687c3e8748a129f *inst/extdata/resultsForTransgenerationalAnalysis.RDS
60de75d6283d71155cea67b8b0b99830 *inst/unitTests/test_methylInheritanceInternalMethods.R
12ceb32e24b6d3bbb6c01679ebff9848 *inst/unitTests/test_methylInheritanceMethods.R
d85e9da94a86e3a4484d9b3cfc74bef7 *inst/unitTests/test_print_methylInheritanceAllResults.R
2bef1d9f51185f746370458d6886f73b *inst/unitTests/test_validateRunPermutationUsingRDS.R
4c54de264926c0a10164deb6ec593efd *man/calculateSignificantLevel.Rd
505acaef442d8755042b5fa12fe94041 *man/createDataStructure.Rd
bc35ad40440d6f02d5d85c3b7285c6d4 *man/createOutputDir.Rd
6eaf1e01eb6c515b9e4168634754768a *man/demoForTransgenerationalAnalysis.Rd
0e3e03afbcde0651621afc24ef5ea04a *man/extractInfo.Rd
e7571a8de85d23acc6073279e4d08ebe *man/formatInputMethylData.Rd
f3c49b0ddf602de4dd2034009ba4137d *man/getGRangesFromMethylDiff.Rd
2fb8bde7bdf3064e43e2482088eefaf6 *man/interGeneration.Rd
86326d5398578859d94edbec1370a3ca *man/isInterGenerationResults.Rd
2c00af8d80490799f08227017fa5b26a *man/loadAllRDSResults.Rd
cbc50d805d1b3b5fb88cd7b70ac231ec *man/loadConvergenceData.Rd
f03498098e1d6dd377cc91c74546b568 *man/mergePermutationAndObservation.Rd
63abfe78fc8323096930053dbcbddb46 *man/methylInheritance-package.Rd
a082330d7cf74e1bd6ce22eb2d9209d2 *man/methylInheritanceAllResults.Rd
2c0f7f7de68e347f32bd7df63db31fb3 *man/methylInheritanceResults.Rd
73477eacd7adfe2724d6c70d82172c80 *man/plotConvergenceGraph.Rd
706e2e372decadae68cdd0c91638b540 *man/plotGraph.Rd
9d9ed6f6861d9aa17f83c82d9f439269 *man/readInterGenerationResults.Rd
d69cc34060d3c8f12e89473ef9123ac2 *man/runObservation.Rd
b6afee8910b217d67291c06878a74a1a *man/runOnePermutationOnAllGenerations.Rd
31099c9ce2829677a3c58bbc8c2de290 *man/runPermutation.Rd
3d014eb05c09b9072200815eb433e703 *man/samplesForTransgenerationalAnalysis.Rd
b371548ed9b14b5745360dfc6d7fea6e *man/saveInterGenerationResults.Rd
08592051dfc69c0a508d12b9261eda9c *man/validateExtractInfo.Rd
0a9c11a4179ff4835a7c345bc8167f83 *man/validateLoadConvergenceData.Rd
24347478854ac3af146e3987de60e2b6 *man/validateMergePermutationAndObservation.Rd
16f2e693296719feace1c7ce7875e6a0 *man/validateRunObservation.Rd
60708e18a53dabdffdf4f41ea38a5a95 *man/validateRunPermutation.Rd
d99e2a1743976c025501d5d8fe7309af *tests/runTests.R
003c064753e33b384ca58f31badd8194 *vignettes/biblio.bibtex
a1d964fd837ad85b0cfe850c7bee204d *vignettes/demo/F1_case_01.txt
e13707b057fb51fba51a8a2d4e82ee1a *vignettes/demo/F1_control_01.txt
4f4fa4198632025b7073f0be516604fb *vignettes/demo/F2_case_01.txt
a7f1fb5fbd4e0d7e7097149943a4d83e *vignettes/demo/F2_control_01.txt
8117e830b9448e583a36a0723c7ddd8d *vignettes/demo_01/SITES/SITES_observed_results.RDS
5ff903d430802cbcd7fd453d1b3f3c55 *vignettes/demo_02/SITES/SITES_permutation_1.RDS
4d4f6076260e805faef8c8c0a6276b81 *vignettes/demo_02/SITES/SITES_permutation_2.RDS
80a5e6f4628d118d70057170e1be727c *vignettes/methylInheritance.Rmd
8d986fde017b3a72320251a803e7fcb1 *vignettes/test_restart/TILES/TILES_observed_results.RDS
54b1c2f0e91ec8c516073d702c8efbc8 *vignettes/test_restart/TILES/TILES_permutation_1.RDS
bd78aab8f221697cbd461222048eb7d9 *vignettes/test_restart/TILES/TILES_permutation_2.RDS
