3677a56bce2d9012003aac07610fa341 *DESCRIPTION
808f61a71844be92c264da1a085e5e75 *LICENSE
eb69233bfdf04f06767869ffed5d9fd2 *NAMESPACE
d8edc08d47952223b5be2ec74cca4b07 *NEWS
abcc6c16ea994bce45b847d6fc859dd1 *R/accessory_funcs.R
e86b33b86bbad327c97b3eb5b0189d9e *R/accessory_funcs_2.R
9a54b335fbe460c4512385549407d752 *R/check_bins.R
a1f92e799d23e98d62dc83d861b735f9 *R/extract_CpGs.R
befa8378541ebc71a80db94502bf8ed7 *R/methrix_data.R
912920a399e846352c5b69b5a10e7481 *R/methrix_object.R
99abec1aa65cf7ab0a4aaf6fad4947d8 *R/methrix_operations.R
e741193b3e7b6d8922ea17e45543d140 *R/methrix_plot.R
1645e05ba75679a87c3d3dbe28d14984 *R/methrix_report.R
f6a20fbc16e587eff7445ddaf7ffd0b1 *R/read_bedgraphs.R
cc1e247cba769688421d0a3d85c48de5 *R/snp_removal.R
53a7c021e68d7d303754ddc4d90d5017 *R/write_bedgraphs.R
ed157bafd69836df11286bd44fd9535d *R/write_bigwigs.R
8abb8e0eb0a9bf5f130e0d321e86ce61 *README.md
abe44a5d09adef5864126b221de6885a *build/vignette.rds
a6303a3de74748c1b530977490f1402e *data/methrix_data.rda
84373b9e3db20df59f33737bafd5fe13 *inst/CITATION
206f4193cc3392e660476c5b4a136106 *inst/doc/methrix.R
493a0dde689c46854c4217d1bd25fa38 *inst/doc/methrix.Rmd
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439353455f9ced3ce8e4cd278c047b7f *inst/extdata/C1.bedGraph.gz
16c9096dc581e0556bc39a9e77c5aba1 *inst/extdata/C2.bedGraph.gz
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0c0d0c328b8d2159121fff860952cb81 *inst/extdata/N2.bedGraph.gz
10cfdfad3c8247907a6077d0ac14115b *inst/extdata/bdg2bw.sh
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1eda30ae190b3fc8fcd5526692dd467b *inst/report/summarize_methrix.Rmd
e0f60fcccde447ff326eee2ac0658eaf *inst/script/data_generation.R
514776a28e4fee8103e56dde1056d900 *man/combine_methrix.Rd
45c3a60a70350f749c05603758f1afeb *man/convert_HDF5_methrix.Rd
989ee7bf371dbdac274482a3c0f37ab7 *man/convert_methrix.Rd
48e7d91b7ccb2d06cf0b9b3ea32317dc *man/coverage_filter.Rd
690181acf3fc969537bbcb66e66671c9 *man/extract_CPGs.Rd
41163091fc668938d82f2e1f7e918fbf *man/get_matrix.Rd
e62fee81e4bcaca157ee2c831cca3ac5 *man/get_region_summary.Rd
d5a15b076ccf4faf4f269f1494055bf4 *man/get_stats.Rd
cad3ce07446ef6328a4ff873d5dc98a9 *man/load_HDF5_methrix.Rd
72b535f6418b31b5959dc6014b8eff7f *man/mask_methrix.Rd
3a32d435d0f391990922ad054e952f65 *man/methrix-class.Rd
915f83e0dd10532ceefcf10c803c8f8c *man/methrix2bsseq.Rd
c5831591da184a68ee71b42d84c26000 *man/methrix_data.Rd
c523479ddd37bc13cbad6d69cf6e824d *man/methrix_pca.Rd
3beeb7fc676e39258d8bd57fb1e7926a *man/methrix_report.Rd
0a826f4050a633d82b86a603fb79bc9a *man/order_by_sd.Rd
575df01fdf010b6a4499d358f0834424 *man/plot_coverage.Rd
9c35c1168713f6f270786b6e86295f1d *man/plot_density.Rd
908bbccc02e138c0a3bb1e42c33c5fe7 *man/plot_pca.Rd
8a3419c4bb4b5a103c7b5b90363a05fa *man/plot_stats.Rd
2e236474902104b57af21ed66d165ad4 *man/plot_violin.Rd
8bec4fba19824e74a1ff0e432c74e3e5 *man/read_bedgraphs.Rd
cdad744d5234cd195837db47d0367fa8 *man/region_filter.Rd
36f0f8118b9056dc302ffef409472d3f *man/remove_snps.Rd
faed447bc469eb28be83baaf0f4056cc *man/remove_uncovered.Rd
968b6ba4797f920ca88d7801752bbc07 *man/save_HDF5_methrix.Rd
c52a6b8cc5fa01a9ce0dab44c4195485 *man/subset_methrix.Rd
83bfe5fc9ed734d923724f9d422bde55 *man/write_bedgraphs.Rd
6761d39782526bda55451d2780b51667 *man/write_bigwigs.Rd
6af263aa00df47eec7aa3ef0803dfb63 *tests/testthat.R
e6628cc4affc8cb9451adba9f34020e0 *tests/testthat/test-combine_methrix.R
1148aabf3ef8c04aaf79c2cf9dbccbdf *tests/testthat/test-converting.R
e63cf6fbb0485fe8fedf2b36d95a0430 *tests/testthat/test-coverage_filter.R
ff4c8ff01d544500ea4bfea43e6108c1 *tests/testthat/test-extract_CPGs.R
7b322fbdb773c7abd0dfec3890264841 *tests/testthat/test-get_matrix.R
3f854d6b36d1171e963ca5d82fc3a76f *tests/testthat/test-get_region_summary.R
e147a3a768cb7331377b67572bde580a *tests/testthat/test-mask_methrix.R
0ba124de82eb023f5acf1305420d4017 *tests/testthat/test-region_filter.R
f65012b16d8957a30e52d7c28b65d976 *tests/testthat/test-remove_uncovered.R
5334e5f9c8db3be8ad2f9734d05e0d2b *tests/testthat/test-subset_methrix.R
fdf4d8068937d36899346cf7add0861b *vignettes/logo_large_hexagon.gif
493a0dde689c46854c4217d1bd25fa38 *vignettes/methrix.Rmd
ae796d428372449262aa75ea28187c09 *vignettes/overview.png
