fcfe1363c43578894294557717a7a9db *DESCRIPTION
2dbeab63635c984f83c5e6d164d3c174 *NAMESPACE
40bf576ae8df741bdb292e33c24b8850 *R/annotation.R
da9e3051639c09a6eef51d117e208b57 *R/argcheck.R
bdfe89ccf1b1d502e5b35526b7bf52a7 *R/count.R
8d14224c0e7f11762d2142cc5642b1ab *R/deseq.R
63aaeaf55d2774d2ef9a8e21e868cf68 *R/export.R
4379375dd7cf365d7027f49d09e097b5 *R/external.R
524b3b93d044d9ddbfad080205e30f8e *R/filter.R
f4218ea8623cf44ef085ffab9f271c67 *R/json.R
f959c305c7cd87e3ed3fa8c51e6c23d5 *R/main.R
19d2bbe901e819da975594a687bf8b85 *R/meta.R
0c148e2ce1ba7a9345200e3846ec9bf6 *R/metaseqR2-package.R
807ccf6a904f4f48eb79bea488b81be7 *R/metaseqr2-data.R
0f48ac39005f5f4554f085c1a6e1e312 *R/noiseq.R
ccb69ab8f623d4394bd27736ed7962c8 *R/norm.R
0421e3e20ad8cdb32e752160723e3aea *R/plot.R
d3e52918fa9dea88cc7734d224669a98 *R/query.R
dc922cec09cf70c6eb7eabcacc99a3fe *R/reportdb.R
dd599a2209422da898993a15d73e75b3 *R/sim.R
4ad11115d4483c0adfef14e007ae498a *R/stat.R
752fdf5e3424f718596d993ca242789b *R/tracks.R
fc48818c9bc0d2fe487111aea63f1aaf *R/util.R
c19ad42e0de1107c3c94e849e65fc1b1 *R/zzz.R
54d30166302d25126b71ee3b5688bbfa *README.md
eeed9124b28a821f408ec7625c5957fa *build/vignette.rds
3a9b0e3986d8613f604be516db716bed *data/hg19pvalues.rda
c2601ab32e03c2f97b45f1377c57dd2b *data/mm9GeneData.rda
1e4b0588b1cc60ae964905cb071b20f6 *inst/CITATION
0cd430b3c35b2c6d5a97a00538942cc8 *inst/NEWS
3eac1fa872352025b8876396c990c0f7 *inst/canvas2svg.js
ea351657493f66a7e49deefc93fcbc2a *inst/dna_loader.gif
6c279cf24b80dbbd17236c22ad1bbc98 *inst/doc/metaseqr2-annotation.R
a6f428e41db9bee198cf6e162e649968 *inst/doc/metaseqr2-annotation.Rmd
d2a7251db47c41f338cd3c926e1836b9 *inst/doc/metaseqr2-annotation.html
b4a13bd37ae5d06391a7374ada08fee2 *inst/doc/metaseqr2-statistics.R
f920a8a6d65f07b3e1bc8e14d4a9c6fa *inst/doc/metaseqr2-statistics.Rmd
ce6f2d0353a0ccc62ae6bc0f07ab1a25 *inst/doc/metaseqr2-statistics.html
0570a742c0719f9c89fd542cd2a21f0e *inst/dummy.gtf
f569da454f34cc9b5d1713956b8c81ad *inst/extdata/C.bam
0f64c98b8f96fe0af0e39dd252cb7dc4 *inst/extdata/T.bam
a7094bed2f2d541e29a1f6fecd2306c4 *inst/extra/scvBiasCorrectionFits.rda
ab7fe3b92b6c3018540f6c36d1859bde *inst/jvenn.min.js
6d43d688c759ac7bda1ce4b38bfc7ae7 *inst/metaseqr2_report.Rmd
57c1032238f4fc5a409d362a08b9b334 *inst/script/README.txt
6ae9c62b6f9e589539c232993d9d9dcb *inst/unitTests/test_estimate_aufc_weights.R
ce70c12fa38005a55fdef329bb0f77c3 *inst/unitTests/test_metaseqr.R
551d8f83589a5370fbad8721a8852bb1 *man/buildAnnotationDatabase.Rd
28faea0090d4b266097cc8973a841190 *man/buildCustomAnnotation.Rd
3d208b82a538c4f27c6db5cda1b9d524 *man/combineBonferroni.Rd
2348e14bd38bf5a2bc4d68a7450acd2a *man/combineHarmonic.Rd
37c59eabe474f00dc8a71cb52ef32a74 *man/combineMaxp.Rd
b620557bcca78f3ab2434df6f0b76064 *man/combineMinp.Rd
15abf95ad90d50264929980d618859e9 *man/combineSimes.Rd
b4cd304f06c1a6731ec3f53d7d72c578 *man/combineWeight.Rd
1a53e4948ac84a214babd860c11a2485 *man/createSignalTracks.Rd
a7f5d7943a9fa177df592559dab5d668 *man/diagplotAvgFtd.Rd
435805a7056a6298a14810f276cdc6fb *man/diagplotBoxplot.Rd
e749e9ac89b7f7b665d7794d2e9caeba *man/diagplotCor.Rd
18d97a64048e66971621fa1edd4c58ff *man/diagplotDeHeatmap.Rd
5d8855f5b1a663efd2a38aa1ce939936 *man/diagplotEdaseq.Rd
c6474718f2e08d22ebbaf08332a19443 *man/diagplotFiltered.Rd
0719a66fe0bc7abc579b54173e1a3eb0 *man/diagplotFtd.Rd
f91ef0e73c83a504087493ef623a04d0 *man/diagplotMds.Rd
0ec26e791b8f270faee3b3145e1e17cb *man/diagplotNoiseq.Rd
325ed4e5b0992b95b4c2c1fb5f46953c *man/diagplotPairs.Rd
71fbb6858e8fa22d4a31dbadddd1ad1f *man/diagplotRoc.Rd
a9519d3eb6bc80b8f30273015e4989e8 *man/diagplotVenn.Rd
da776cf15ff28bd3ca5a12e52b2c251f *man/diagplotVolcano.Rd
78280fa083176ae65a0b9fade71018a0 *man/downsampleCounts.Rd
eddb5438ee1aa3f8cd3fa88278a0730f *man/estimateAufcWeights.Rd
911e93dd34f6c5c27cc5c44ee72f6075 *man/estimateSimParams.Rd
c4edb8e1c82909b75475fbdbde62f368 *man/getAnnotation.Rd
569ea737022f5e399fc210b623227439 *man/getDefaults.Rd
8e01f20445bcaa5612f3cdb1e9b8d784 *man/getInstalledAnnotations.Rd
46ad9915bdd7a6cef3100c4d9c11d3ed *man/getWeights.Rd
c492f044de5e1ba0c4c8af1e554b4313 *man/hg19pvalues.Rd
d2af737fd54ff84f1347ab574ee5b23b *man/importCustomAnnotation.Rd
18fee0260563f814663c29580bd42083 *man/libsizeListMm9.Rd
5a2a8919d2e257e8689fc4f5ad5f355b *man/loadAnnotation.Rd
687c946b653a63d1296377c0376c0722 *man/makeSimDataSd.Rd
2336dd6143d609215251772a116d917a *man/makeSimDataTcc.Rd
eff0bbe879843c54b38657a9cda87a17 *man/metaTest.Rd
df1087276350a8b77e1bf467b8e9b5fa *man/metaseqr2.Rd
a567c9ce9972d9f68966efe9fea29c94 *man/metaseqrPlot.Rd
a3230ccd7c71594f09697938c9c12f35 *man/mm9GeneCounts.Rd
3e12f329778d834b618228e59577fe2e *man/normalizeAbsseq.Rd
caaf6e2b4e55325f4ab5547f69189d05 *man/normalizeDeseq.Rd
4e65a63070f1116f6fdb9d794ddd545a *man/normalizeDeseq2.Rd
9ce84ec86fc40e5d22ada91117874c25 *man/normalizeDss.Rd
a3ee7320c1809f6c368b75e69120c637 *man/normalizeEdaseq.Rd
f166fb5b1d26a6eddc27e01b0b8bcc44 *man/normalizeEdger.Rd
6aea65f7065af878a9fd0d90b4ce1774 *man/normalizeNbpseq.Rd
e064b7f364dc2a38c710a167d4344b3c *man/normalizeNoiseq.Rd
f25e8fd9bcd90cd98fe11af83b0ecd7d *man/read2count.Rd
7c7fc5349bc301015153cf997c203dbb *man/readTargets.Rd
f4bc49545c02bef554d4c96793363c03 *man/sampleListMm9.Rd
d3ddd03c8a6d53938ed6f72676ddbb19 *man/statAbsseq.Rd
2b97be3bf838863c505d9b1631f0c979 *man/statDeseq.Rd
dbb7834448f4ad75851f5e21acd1863c *man/statDeseq2.Rd
43d13aa78714d56e69711723263bea52 *man/statDss.Rd
5b124a474cfe90f542c652c8a018f969 *man/statEdger.Rd
dcaad48c8a0ec04561d429e07df41403 *man/statLimma.Rd
297c577b53efe39d3b97edbd6de9fa02 *man/statNbpseq.Rd
5118cdc887143f199a602fb9d8b22c80 *man/statNoiseq.Rd
2b66cab1ff1079813bb6bfaac34f209f *src/pval.c
0dbe9fe479f970ba253f59d449d39d6e *tests/runTests.R
a6f428e41db9bee198cf6e162e649968 *vignettes/metaseqr2-annotation.Rmd
f920a8a6d65f07b3e1bc8e14d4a9c6fa *vignettes/metaseqr2-statistics.Rmd
