272786710e14595d25e0dacf40bf21c0 *DESCRIPTION
551f2342b7c8416d7489bca8079b925c *LICENSE
aa427aa49b1eebb33cb319f01637ee0b *NAMESPACE
86b2087730ace10cba7a3d28d33e051a *NEWS
c6cf99364930498c68943b5deb1ee3e0 *R/fit.R
155bcce0496e941e412ece94c41e33c6 *R/maaslin3.R
4ed5f8bdbe9c4b5d45b6e790a95488a4 *R/utility_scripts.R
312a1b4d77ce552efb163f9df71c1502 *R/viz.R
ebe484ed5957f78790d03fd9daf745aa *README.md
6116ef03cd4079e1655886ff7b47ceb0 *build/vignette.rds
fa7d6cd8718ceb27cb830aa2b00b386d *inst/doc/maaslin3_manual.R
ebd443dd7037181679e8c14753667059 *inst/doc/maaslin3_manual.Rmd
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4d731c5907654bfa7b76ce093699d281 *inst/doc/maaslin3_tutorial.R
1935677fea45d3e710111c7e73d6f55a *inst/doc/maaslin3_tutorial.Rmd
6594b2138386758898fb76b788e44ce0 *inst/doc/maaslin3_tutorial.html
1d81ebad1f5a6baac0c2a8072881519f *inst/extdata/HMP2_metadata.tsv
f12221840c0a583a34f666b88ba2a9bf *inst/extdata/HMP2_taxonomy.tsv
3c8b287550011aac0905663aa1333fea *inst/extdata/abundance_spike_in_ex.tsv
bb79f2a60e95075b403f381b3e41ad26 *inst/extdata/abundance_total_ex.tsv
1015768a737924a005f24ec786fac8d0 *inst/extdata/metadata_spike_in_ex.tsv
fed1712e82ba0b73d06c42bd1ff65b08 *inst/extdata/metadata_total_ex.tsv
7fabbc8e9abb47c5aa9d37cdcd3a2d20 *inst/extdata/scaling_factors_spike_in_ex.tsv
202e13e0ee4371ed1cc180e4b13cca4b *inst/extdata/scaling_factors_total_ex.tsv
1869fe75e3ec87f92c73229298e028ef *inst/script/data_generation.md
1350e0381573e77982ac0c2584043eb2 *man/maaslin3.Rd
63f9e2b8d83e00f52eb4d12b77f5f608 *man/maaslin_check_arguments.Rd
c8774a59d6b13ed62f0914befd34d156 *man/maaslin_check_formula.Rd
5a8e5a1ff810831e5b9c3eb36ba1c46c *man/maaslin_compute_formula.Rd
7625bf0b0c8ee2b87056167a2dbd09c7 *man/maaslin_contrast_test.Rd
f7b8eaa469f91648c5013d6d97096380 *man/maaslin_filter.Rd
37b67c39453eb7f4ece4386ba49ec91b *man/maaslin_fit.Rd
a7ad001365b494f4bdbd0fe1cec5629b *man/maaslin_log_arguments.Rd
ecb0d93be158021fd6f28eeba720d196 *man/maaslin_normalize.Rd
007694bece0d9cf3446b2e4c73833164 *man/maaslin_plot_results.Rd
2c390248043cc6b60e8b4e6060af8efd *man/maaslin_plot_results_from_output.Rd
4e90fb3955118699a1807200d84cedf6 *man/maaslin_process_metadata.Rd
c50c693cee12e2620cd09346235e2cb9 *man/maaslin_read_data.Rd
8fdce38047880c291e1e833e6f6f171d *man/maaslin_reorder_data.Rd
5613745e0b3f996c83bde75bb7a0e7e2 *man/maaslin_transform.Rd
8e791ecf086de934ae4b36c8b171ec3d *man/maaslin_write_results.Rd
e13409e38350c418f16ec580f41d3ea3 *man/maaslin_write_results_lefse_format.Rd
f8c1f04c207ac2686eac4b45802d8893 *man/preprocess_dna_mtx.Rd
dbe6125314cc81528e2c1bd975639a56 *man/preprocess_taxa_mtx.Rd
51e191f759b6150388ad8f2b02c8e02c *tests/testthat.R
8e93196972874b8402a3e192d179f4e9 *tests/testthat/expected_results_run1.tsv
9e05977c07430ec4aab137190d7cb98b *tests/testthat/test_Maaslin3.R
4a52ab952ad2015dcc8227f41ed328a3 *tests/testthat/test_maaslin_check_arguments.R
35f8ea9fb5cbe7b96a17336a38a5019f *tests/testthat/test_maaslin_check_formula.R
25dbf5f50008883f60218dff4579da1a *tests/testthat/test_maaslin_compute_formula.R
f8bc3fa9d708d7e5ed3c436052e687f8 *tests/testthat/test_maaslin_contrast_test.R
80cf6500bd39d5f431f03fe247b1c23b *tests/testthat/test_maaslin_filter.R
c27dc4b31fd2557b4550aa81787a2190 *tests/testthat/test_maaslin_fit.R
7fd9b866073aa5cb922e0e6731a5a90d *tests/testthat/test_maaslin_log_arguments.R
9a554a2591ba7fb13254d017814814d3 *tests/testthat/test_maaslin_normalize.R
9b174896727c487ac6a930958cbb38f6 *tests/testthat/test_maaslin_plot_results.R
a3c06838a0ac1d828b2fdca7e43f778f *tests/testthat/test_maaslin_plot_results_from_output.R
6142793a34c1bd37ceb7fc426cbb8e0e *tests/testthat/test_maaslin_process_metadata.R
704e2c043d240f104f1023261fe7a41f *tests/testthat/test_maaslin_read_data.R
7dddda09c3447cb479f9e27786485a5f *tests/testthat/test_maaslin_reorder_data.R
519e50c38d07cb669f1b6a3bc39ad013 *tests/testthat/test_maaslin_transform.R
d0857b06ceed78b80429448b89bd3535 *tests/testthat/test_maaslin_write_results.R
557f38a5b94b29119c83ba5d228ec8d8 *tests/testthat/test_preprocess_dna_mtx.R
1af93d2969a1a225c00f7875390ec3dd *tests/testthat/test_preprocess_taxa_mtx.R
ebd443dd7037181679e8c14753667059 *vignettes/maaslin3_manual.Rmd
1935677fea45d3e710111c7e73d6f55a *vignettes/maaslin3_tutorial.Rmd
