22daed203dcf89b712a5dfbdcdf124cd *DESCRIPTION
971027046c1aa856127d803c1db0c60f *NAMESPACE
f84d66c56c35ee15be83b6439f74d70b *NEWS.md
49ceb90ccbe4312dfbaf05438ff76292 *R/RcppExports.R
e67b847d22fb5b95c57f63b88d0d6b28 *R/aggregateNonCountSignal.R
e86ba60716a88ac77c73ec8cdb9777f6 *R/aggregateToPseudoBulk.R
a4a7f4ff24655489217f6208430bb9e7 *R/aggregateVar.R
24de4477ebee3d9b4e7137cd4c92abe8 *R/buildClusterTreeFromPB.R
4871f8ac4fe4f3c7909eab5c00d4371c *R/cellCounts.R
ddf1e23e6ecf1dd75c2db29aee3a6ff4 *R/cellTypeSpecificity.R
18d46c0fb11ef863edd6ef1cb61c0448 *R/colsum2.R
36e2774eeda033b0d900b6b9122be9a5 *R/colsum_fast.R
f96e8452237a539f2cb3171da90c73a9 *R/compositePosteriorTest.R
d001d64f67c3c7c5f9726b28e46035a5 *R/computeLogCPM.R
51f9435651e4d00ced6b9997ad71ab9a *R/da_to_sparseMatrix.R
a0a0c51159f01f5c60efef3cb57b6acf *R/diffVar.R
5dadc4bb7e5a5f4fe536bd8317934dc4 *R/dreamlet.R
51e4befda00d4b64281562d75d918d4b *R/dreamletCompareClusters.R
fb69fc531476f370e05c8c574f2e04a1 *R/dreamletProcessedData.R
8bb1d8f6501f7a8340f66b28f2800bef *R/dropRedundantTerms.R
4986421aed535e7f33f09137361d5fe8 *R/fitVarPart.R
1d87e1eadf31bbabd5d0d1ca518e8202 *R/mash.R
85a6d9aa5545fad3c7599e89550d6b9a *R/meta_analysis.R
a314b4ef8f7a10f19392e289fe665e68 *R/misc.R
a2f73f3630576a3262da26aa05c3eb45 *R/outlier.R
89218511230df5e97a3af7d790f31021 *R/plotBeeswarm.R
5d0b9c6e883e4af949d420a02f7f4dfb *R/plotCellComposition.R
9d50965b503f30e2341b9fd71306e4ef *R/plotForest.R
2ed152f864096992e1c86879e587d6e6 *R/plotGeneHeatmap.R
7ec69a5bbd7153059b2f54bbb12def74 *R/plotHeatmap.R
5dbc0d43426d2b915b229ffb702c6abb *R/plotPCA.R
a08ee2555535a331dafecab6bdaa2440 *R/plotPercentBars.R
9fda5bb8eacc2c0ce99a6d6bb2da8c2c *R/plotProjection.R
2734897628d8213569b75bbf3aacf845 *R/plotVarPart.R
b0e9b07648136c4502b36827f097b4cc *R/plotViolin.R
7ae4a04d27d5375cd28886e128d4e53b *R/plotVolcano.R
96e04780332c742db72cb6137da69194 *R/plotVoom.R
47ba60c49c7a9d7ee4cd4b061d5b875e *R/processAssays.R
5d14f59ad16bf6f6ef95c2988ec36d55 *R/removeConstantTerms.R
938d59a6666345949213ee53592f1149 *R/stackAssays.R
b01552621dfca0816000492ac113ecc7 *R/vpDF.R
d86221ea43578c3030b1f5c28255a0ff *R/zenith_gsa.R
89ba7786e2838a0b6cecb5c1db5f0bf1 *README.md
6f0495c26ad8d620fc9c9dcb57f7b201 *TODO
509d674228c45cf0944ee3b4f166e5a5 *_pkgdown.yml
26b025ab9e1384f64196a9333acc744d *build/partial.rdb
a7b1fc9a33c1248d4b816647bee7c476 *build/vignette.rds
a6210c0d417b192798c41d2b722c65e1 *inst/CITATION
927051241b6bebbd3b956a7df38f69ea *inst/REFERENCES.bib
53277be599a98bd7ca6d26ad6f298b28 *inst/doc/cell_covs.R
4a838d6d18c674b3b051f7e9e3de0141 *inst/doc/cell_covs.Rmd
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4c6a871858f3f690e63f064381dbd726 *man/cellSpecificityValues-class.Rd
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5d8ff8bb8537d44ec98d551da3c15158 *man/checkFormula.Rd
9878e08a8207452d022cb726af4384be *man/coefNames-methods.Rd
4e8ea0b9ab818c9c0b0d0eab7318b1aa *man/colData-dreamletProcessedData-method.Rd
10d0b12b1173efeee51b68182188114c *man/colData-set-dreamletProcessedData-ANY-method.Rd
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ae8d537ab9a67ee4fd4fb362823aa47a *man/computeLogCPM.Rd
fd8616943234deedac05d02625b4f60c *man/computeNormCounts.Rd
574e27924a987da99959a8afff5419d3 *man/details-methods.Rd
6df05a90878a26dce01f11f53858cc59 *man/diffVar-methods.Rd
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6b8342f3248bcf8563b0b281a60bd956 *man/outlierByAssay.Rd
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8a84c4e3d45b4e29259b4e7112d366c0 *man/plotVoom-methods.Rd
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75ec86d0c38565f4fac0a20477b035f5 *man/residuals-methods.Rd
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9f2c3a2edc5e1076feb265ada60a9044 *man/tabToMatrix.Rd
fb9dfcfd595a76aaddcf114339a9947b *man/topTable-methods.Rd
66029219f3f954d31aa964435e206117 *man/vpDF-class.Rd
d07422a4f4061c70b62bdd5275695069 *man/zenith_gsa-methods.Rd
b4f0b014ec53404e843dbc718fabf57e *src/Makevars
b4f0b014ec53404e843dbc718fabf57e *src/Makevars.win
ebf71bc91fbcb318fb9875dc09034425 *src/RcppExports.cpp
164afd2c202e9d398ce83a09c851da60 *src/colsum_beachmat.cpp
f625979fd0dae6cdd2ff7f6a55cc3ce6 *tests/runTests.R
4a838d6d18c674b3b051f7e9e3de0141 *vignettes/cell_covs.Rmd
a32713aab6e1bbaeee045684c3083bb3 *vignettes/dreamlet.Rmd
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74dbfd3403246dafbf2034091843db50 *vignettes/h5ad_on_disk.Rmd
8a62c1b56f8a50b58c0a991d96386552 *vignettes/mashr.Rmd
b038e2c8cab925bf8e788dff48d1624d *vignettes/non_lin_eff.Rmd
f3aba6aa0bf9fe1f8b61c8027f3d3ee4 *vignettes/old_txt.txt
159a422361e9e31e1da5174c4d31e566 *vignettes/run_vigs.txt
