6e42e54ecde9442673a4912f884ce652 *DESCRIPTION
8e11dc75c0a4ca5e8575885deaf35a97 *NAMESPACE
83032d5607652d8d9a56dda6dee12761 *NEWS
e9f2a01a44d5d25c90b776ae6fb87185 *R/RcppExports.R
ec3bd13f4a9d36e1df98bcf820427b99 *R/bayesian.R
e43dda8640b2f07de751effa13651ff9 *R/ccfindR.R
6992984dbdcd9f3c3962d13d6a6a750b *R/factorize.R
d686e42585dfef9a2a094f033f9f820a *R/gsea.R
51ce86e7a275d5acdc09c1f18f59451a *R/scNMF_class.R
73a7abff4beacffdc78a1fe6c548c67e *R/tree.R
60394d6beac80f2a2f9795ab28b975b0 *R/utils.R
8b0c0c2366027c3c3d0b8bbf06120311 *R/utils2.R
9823d8e315ea4b7070b11185d27c9373 *README.md
c959751d5e681582df7b877c39140871 *build/partial.rdb
91107f11695f3dda0064ce29dbbd11e7 *build/vignette.rds
024290787415d7f1e841766655eb603d *inst/REFERENCES.bib
fd620c5250708f4c6025dcccdf8a7959 *inst/doc/ccfindR.R
28179ec3562503c733539e315b60fac5 *inst/doc/ccfindR.Rmd
e272196de7915e22221905c2664825b3 *inst/doc/ccfindR.html
d30a2f4ed163374588f5f8740aac129a *inst/extdata/barcodes.tsv
e5cdd89d660a1cfe0aab0cacfb211557 *inst/extdata/genes.tsv
9a99097e8f67d4ca0fa60215a3b997e5 *inst/extdata/matrix.mtx
0b67273feae7cd1db46b4686bdd2ee9c *man/assignCelltype.Rd
5e7443f38864243fd0e925739f5b0c54 *man/basis-scNMFSet-method.Rd
fb231c52310d494912683b066ee7cbfd *man/basis-set-scNMFSet-method.Rd
dc88545ca787ef3d62ae0a7674a09700 *man/basis-set.Rd
22d65b987eb408e651763d0bf9b42b51 *man/basis.Rd
ed2e7038726665728604d4295938f058 *man/build_tree.Rd
d39508955fd838d34ee4a6cf72c80743 *man/ccfindR.Rd
eb429e3f7d958fe64b159adfc45ef0e5 *man/cell_map.Rd
6c24e4aecb4b3b605eb5f1c86569524d *man/cluster_id.Rd
f380a6a6ecd214f45ffe19999cb73f2c *man/coeff-scNMFSet-method.Rd
553a85df1530b220b074a4008ec11e82 *man/coeff-set-scNMFSet-method.Rd
58045ce2f2a299a38c03ee1ee3183366 *man/coeff-set.Rd
a3b97a4aa9913ff0acf6a649d9377485 *man/coeff.Rd
f2fbfef524f6a5ebf5e73dc4741e8323 *man/colData-scNMFSet-method.Rd
4b77d4c5f8e23d412628f40d97cb4e13 *man/colData-set-scNMFSet-ANY-method.Rd
b8b2d9739cf284c22af24b7ee26fb3c2 *man/counts-scNMFSet-method.Rd
86ccdc7cfbf60da6346f1ee18dec1be2 *man/counts-set-scNMFSet-method.Rd
d1a870dfb1de484eb0d5efd73d0602ed *man/dbasis-scNMFSet-method.Rd
2066a52c9322580a687903be6c381d8d *man/dbasis-set-scNMFSet-method.Rd
081e653c1b91e16fa391bd3d36aa17e2 *man/dbasis-set.Rd
e5f10bbc8040570ce1dbe9b47dcb880c *man/dbasis.Rd
004816e47a8fa1a5338644fe539dd294 *man/dcoeff-scNMFSet-method.Rd
58cd8ae7c2d191c9f0a4c599862ca942 *man/dcoeff-set-scNMFSet-method.Rd
35627003e0fbfd49d2f20636e74528f8 *man/dcoeff-set.Rd
e0c8e7b34bd755c377e8156b375e6490 *man/dcoeff.Rd
0e7bc36d183d112221ed2928317f89cb *man/factorize.Rd
bf7aabd934c2876b2ad6c95cd4900b06 *man/feature_map.Rd
47a31d4806d5c57848c68ea993b343fd *man/filter_cells.Rd
f1a6e5e3e05c44c6d165394858084f63 *man/filter_genes.Rd
fba77455d47555d1281dcd54345cc5b9 *man/gene_map.Rd
aad91329ace298895c710b0116d01d53 *man/measure-scNMFSet-method.Rd
8fb7c3a7aedca90695177f9efe08e119 *man/measure-set-scNMFSet-method.Rd
f32f08e871e9a8e7c8392da07fc9fc03 *man/measure-set.Rd
7f231336a8455bba1fc97010fef556c2 *man/measure.Rd
87e41913312c9c874e9994f6cc806767 *man/meta_gene.cv.Rd
58097c621a1a152df3f8ae55fb5b5f30 *man/meta_genes.Rd
3c076f8de8cda2d9e07f3c285b58f7e3 *man/newick.Rd
b2919f184628865e66027528eda2a4e6 *man/normalize_count.Rd
de511fd5b5b0026404cf6c57278a2215 *man/optimal_rank.Rd
7f7f1e8355fcb48c9df02a9e116dbb5f *man/plot_genes.Rd
bf75ee4cc73a69eb28e23bd8436d26cf *man/plot_tree.Rd
d0fc77be62eae7e6b4006112809dea95 *man/ranks-scNMFSet-method.Rd
34eb52eaa95097db617541b5ae1f21f8 *man/ranks-set-scNMFSet-method.Rd
872a9586c1d65b0336bb59aea04542a7 *man/ranks-set.Rd
0c83b638ebb897d50cdd0408193af44f *man/ranks.Rd
f8fa2d734ce77f3a92c7c169d40e4790 *man/read_10x.Rd
c4a5e55920cfc74ee3aa39ae095de491 *man/remove_zeros.Rd
a613527a452cb8b3d43d21ded5cc5639 *man/rename_tips.Rd
470cfed3c5a65adfc7b6ced4750ff4f5 *man/rowData-scNMFSet-method.Rd
f5a6ffe2a2335c03bf6ee1e1fb49dc8c *man/rowData-set-scNMFSet-method.Rd
dd9cf731043ef2360e32981d5a033ef7 *man/scNMFSet-class.Rd
e447377d1e19c2930fd1aabd1e25a10e *man/scNMFSet.Rd
faab761301c722a8176da96f370d55eb *man/show-scNMFSet-method.Rd
77cb8626f15cad67a0641463eb9dd5bf *man/simulate_data.Rd
de49d59f926544705be21f987b94f1b9 *man/simulate_whx.Rd
d16d5c6820d02dbb9d525449b6b42f30 *man/subset-methods.Rd
68c77ae02fcfb45d0e7debbaa6f8d435 *man/vb_factorize.Rd
eada552914626f640a1249cffa9aa128 *man/visualize_clusters.Rd
7c037833cd987b57d94a8225aa956d86 *man/write_10x.Rd
563c117aa12b97ab0d52c5f14a59ab82 *man/write_meta.Rd
9950259e2fb1a8cc0ff9b1fc0a1ba90c *src/Makevars
5f2ad9b2393d511b0e658457892dc56c *src/RcppExports.cpp
14142a8faa4517639fb5c341561e687c *src/vbnmf_update.cpp
28179ec3562503c733539e315b60fac5 *vignettes/ccfindR.Rmd
7ffb520fb8f8641415134d56919bb97e *vignettes/nature.csl
ac5b24c8cd63f011a362de86d3a9e6b0 *vignettes/scRNA.bib
