1e4f06646f2f1c39dc294057dd0ea251 *DESCRIPTION
0e111b65d3c6d00c792008b7484e9658 *NAMESPACE
f8e0e7579135eb8e14d6893e458d2e08 *R/AllGenerics.R
a041ca5e1461a37d088bb3f6805170c0 *R/bumphunter.R
e5b435b1c48a9abf88f646dac21f5318 *R/dummyData.R
d6ff5297abd2743ca5a065735c0def5e *R/limmaForPermutations.R
74a1e98ff7b340df6704c3bfdd9fee7d *R/matchGenes.R
12d20b479b5647032b8493d55938c903 *R/regionFinder.R
dc438ca6a7cc099c8789615c588d02bb *R/smooth.R
0a4d9488034e5c7944da7b1fc0b8e4f6 *R/utils.R
dbacd8ea0dfad4abd1beee2d5dfdca83 *README.md
5314f45c618c0ddd600e5678439d23d9 *build/vignette.rds
f825c6ff1ebdef8be55df5589f334c3f *data/TT.rda
1f659bbcddc8dc0d38d1f54882e31fe4 *inst/CITATION
4aced08a6bb11723f757a5a44780164d *inst/NEWS.Rd
2d6b4a524120becd549385b13821df93 *inst/doc/bumphunter.R
8c3659e40a83ca20899e5d96c147ec7f *inst/doc/bumphunter.Rnw
24b8038163aa56ef7ae949d41fbdeceb *inst/doc/bumphunter.pdf
7713bf33184f08476b79cd49fe052828 *inst/testData/testData.R
e0c6af1bf70ad5967853243a4e476bfa *inst/testData/testData.Rout
68f5a33b9ce77ed926d918826173757e *inst/unitTests/bumpsTest1.rda
d9c87a86e88abfd4d62b5b2850340d51 *inst/unitTests/bumpsTest2.rda
a3dbec8cbda732b2f954ce0ec468193a *inst/unitTests/loessSmoothed.rda
e035f8d2ef887b70acc503c4d0854e50 *inst/unitTests/loessSmoothed2.rda
b2818c02db2c182ef0afd58042453b52 *inst/unitTests/runmedSmoothed.rda
c0b0caa8791cbb32fb25debed7513be6 *inst/unitTests/runmedSmoothed2.rda
2685e71e4c61e6d3cf6a12bf8ed44206 *inst/unitTests/test_bumphunter.R
79004793c3f02da3c499af7dfb1998e9 *inst/unitTests/test_smoothers.R
4528a151263a0c0986ca2441ca7c266e *man/TT.Rd
1cbfd2533a6eda47eae51e698a39b00b *man/annotateNearest.Rd
9dae3c1e79bcfcd587b6049369c87d6f *man/annotateTranscripts.Rd
14ed42a48f075ab529822b5a7786fa6a *man/bumphunter.Rd
c0d430799bee2d20ae27d8b6c42fdadc *man/clusterMaker.Rd
66bbe472830c687b4182a21c24b642fc *man/dummyData.Rd
e0428ceea9adf8cfe089197b691ebaa2 *man/getSegments.Rd
388f9fb5a66989e7b1eafd9e214439f4 *man/locfitByCluster.Rd
8e5020750232226ad57e441fc6b8ac65 *man/loessByCluster.Rd
0bd7d6777b5ddd6cc5dc8a638b1ff85c *man/matchGenes.Rd
f2ca0f7ee449e68d7c65f9e8ee8d0126 *man/regionFinder.Rd
c1be86a6dc7770a9b4251827549148ca *man/runmedByCluster.Rd
84d61d819bb0485cedbe9a8ba07d2ea2 *man/smoother.Rd
458e72d3faa3c74b0b4dafa6443b113f *tests/runTests.R
9843d358adde5be7ecdcc736dbaea9c7 *tests/test-all.R
27c2e3a56eedf107c321ad95e2321a58 *tests/testthat/test_annotation.R
8c3659e40a83ca20899e5d96c147ec7f *vignettes/bumphunter.Rnw
9d11c1556d4e466a5ddf5d30e86399d7 *vignettes/bumphunter.bib
