d698ac176ce79db34bb0d3cd874525ce *DESCRIPTION
54ee3791bfa839379a2912393225b13f *NAMESPACE
87698c35dd4dd2f63f0ddca353aad910 *R/annotation.R
6658231c017e482af438afd8919c4b05 *R/assign_pseudotime_bins.R
d7a423ea33275a194c9336ea288f7f4a *R/blase_data_class.R
f1b7414590c7b9444d05d4cb8aec44d0 *R/blase_data_conversion.R
16c0d3e31759700a372b89bc7c16f9f0 *R/data.R
4a2c89bd1ef0b9dd2ba2e24d7c0fb532 *R/gene_selection.R
9d9b9ad380133c75dc6afdc22c2f4377 *R/mapping.R
b1e88ca7b822848b2dfdb4811c5476ce *R/mapping_result_class.R
c8ce3b01f32611cc14fc39098698688c *R/mapping_result_plotting.R
f30e2bed41146fc780c93e54acf1f9d1 *R/plot_theme.R
8e6fb7d49c1cde0b62ae672c217f4bb4 *R/tuning.R
47a13d84735131cd4bd66e131833bbd7 *R/util.R
85be745866e85e14e332055ac179187a *README.md
8e4d4beb41ae87010fb39ca806014ab4 *build/vignette.rds
3529cc5a489e0152c50a3520bf3a26eb *data/MCA_PF_SCE.rda
d158729e1c467e99a94d5197ce00dbb7 *data/datalist
0fdb807dc43c2d6a013834a3bb1e78af *data/painter_microarray.rda
c48556f613e4ec2026fab12a7cf14021 *data/tradeSeq_BLASE_example_sce.rda
03edb46db7e94e8d5dc03c45514f6bd7 *data/zhang_2021_heat_shock_bulk.rda
3cdc13f939b6ee534afa9cdedb0b0107 *inst/CITATION
02994fb2cb5e8fe2b42bedc23bec845c *inst/NEWS.md
e39e143fb6105091b7f066856420f69c *inst/_pkgdown.yml
c1e0b10c6d2b1ffe5825535b4c273cf3 *inst/doc/BLASE-for-annotating-scRNA-seq.R
2c7d31f90c3074fb37e501bc33511029 *inst/doc/BLASE-for-annotating-scRNA-seq.Rmd
bbe576f7545677743aab43f8dcc4a731 *inst/doc/BLASE-for-annotating-scRNA-seq.html
c093eac3438892cc43a0466e0d0c88fd *inst/doc/BLASE-for-excluding-developmental-genes-from-bulk-RNA-seq.R
3d42b150eccd6a17e731afbbeeb66248 *inst/doc/BLASE-for-excluding-developmental-genes-from-bulk-RNA-seq.Rmd
aaab20b5c88530d9fd772587fd156d64 *inst/doc/BLASE-for-excluding-developmental-genes-from-bulk-RNA-seq.html
737dd5f4dcbf9854adf5695255593c54 *inst/doc/assign-bulk-to-pseudotime.R
b42e196a103cc08d36b621959ec6dafb *inst/doc/assign-bulk-to-pseudotime.Rmd
9aa3f51bfda6cd1ccd66cbf44dd5fd14 *inst/doc/assign-bulk-to-pseudotime.html
59a5729464f65e3ae9d768b2b73ba86c *man/BlaseData-class.Rd
b8223b4d8c0a4b6bf010f9319b9b4b2e *man/MCA_PF_SCE.Rd
62bf750c1bb83e5d5e2356c8d49cd2aa *man/MappingResult.Rd
48f56e06b5a3c3dbcb56bc3b73302ac7 *man/PRIVATE_.ci.Rd
a8533b9a6300db872e9d1dd423d4117e *man/PRIVATE_spearman.ci.Rd
13611869ee4d697c8d351060fa7d889c *man/annotate_sce.Rd
c0172617d5bf3496cc3d7966aa281057 *man/as.BlaseData.Rd
36adafc653e386a49beb2a5e0617266f *man/assign_pseudotime_bins.Rd
9f53c8c1c0e4ca117ae14a73fadf4039 *man/bins-getter.Rd
18e87ddc9a4c2eb33960715e4b7c0e8c *man/bins-setter.Rd
8bc22dbf2fda3b1efb6696f367aabe1c *man/calculate_gene_peakedness.Rd
939e4fbc15577f0c20fb1ac6bc681546 *man/evaluate_parameters.Rd
c44b227705344c8879056c450e71dd5b *man/evaluate_top_n_genes.Rd
32cb276b6dcaf4f2afe9e06868a42cfa *man/figures/README-pressure-1.png
703d20d4dd31f5baa92438ffcc758dfb *man/figures/logo.png
fe239555138f17bbc8247f3a9a1ce28d *man/find_best_params.Rd
54df1130f2d05a0567fd74ad007d4ed1 *man/gene_peakedness_spread_selection.Rd
d3528941e6938b7b2d77249211fe0071 *man/genes-getter.Rd
0c74d55a4c865294549d8926082070ca *man/genes-setter.Rd
b103ef21d27ce25004e6025d1647d96a *man/get_bins_as_bulk.Rd
3c8c34a6fce0053305c57ea9ffbe7edf *man/get_top_n_genes.Rd
037b32c708a56fa88c409cb6aa402e10 *man/map_all_best_bins.Rd
23ffe572538fab735da7ed1fbdf7a196 *man/map_best_bin.Rd
ac36eb438c21546ec15e5596fb76b3d2 *man/mapping-result-best-bin-getter.Rd
9b737e1b129096ca6cc67bf5d36e9af9 *man/mapping-result-best-correlation-getter.Rd
edd41ffae6680b637a04e8aa93bfec0e *man/mapping-result-bootstrap-iterations-getter.Rd
53d96687cb0d337fac95737e32db9fff *man/mapping-result-bulk-name-getter.Rd
fd5d4cc7ddfd956df29b6587544e7821 *man/mapping-result-confident-mapping-getter.Rd
84df9c255782c46184b9341dd29bc7f9 *man/mapping-result-history-getter.Rd
3b1ef534eb0a9a32de7c407cb10dde60 *man/mapping-result-top-2-distance-getter.Rd
53cb0fad796fa03089963de2fb59cf2b *man/painter_microarray.Rd
1e41d353a4be6a3412fe791f4e9e3606 *man/plot_bin_population.Rd
7e7e38799e4c3443628ebf7c9bb6cda8 *man/plot_find_best_params_results.Rd
39514ad11404c49238a83c2a237b57af *man/plot_gene_peakedness.Rd
bd70ab1e4f6dca7927c10d7dbb5e963b *man/plot_mapping_result.Rd
eb78ecad06b2153939c4d90d05e478cd *man/plot_mapping_result_corr.Rd
f01b02a1508391e4153685a81e73b864 *man/plot_mapping_result_heatmap.Rd
c00b6e32f46cdc2ebdeba0cc81577a28 *man/pseudobulk-bins-getter.Rd
f15cd351118201fd9a65bb675fd2117c *man/pseudobulk-bins-setter.Rd
405346cb23a318202e23de3cd453ad7d *man/show-MappingResult-method.Rd
04a4cdcb9e191047aa0db3a8edf12751 *man/show_blase_object.Rd
a37cd47a900284fe740fd80dbe1f8bf5 *man/smooth_gene.Rd
5f65d78f91cfaa44cfe0881b4ed22c9f *man/tradeSeq_BLASE_example_sce.Rd
1de413bcef23d084c004640c76b7b17c *man/zhang_2021_heat_shock_bulk.Rd
245d219e14121cd005746be12d383937 *tests/testthat.R
98039546647d9373ea4a7a37fdfc43b2 *tests/testthat/helper.R
cfb56ec95c09f50f14745d1f5aebc25d *tests/testthat/test-annotation.R
232cdfbea0d107ffb4e952231d874315 *tests/testthat/test-assign_pseudotime_bins.R
824deb94e658c58bfd72516c15da4967 *tests/testthat/test-blase_data_class.R
8fbeaa08401acf34141474bfee929e95 *tests/testthat/test-blase_data_conversion.R
6d309cdeff4cb8a996526f93982e1dd7 *tests/testthat/test-gene_selection.R
e63ceedaa6986e46ee6eaeaf31808675 *tests/testthat/test-mapping.R
5eb7494ea8c43958411a0edc71e1afac *tests/testthat/test-mapping_result_class.R
3f40e9ef4407bbd51e0744f985bb6232 *tests/testthat/test-mapping_result_plotting.R
a5fc83dfe1c5dcddb3815eb5c20abd2c *tests/testthat/test-tuning.R
4018a5637ed3aa83bdcfed475d8036b9 *tests/testthat/test-util.R
2c7d31f90c3074fb37e501bc33511029 *vignettes/BLASE-for-annotating-scRNA-seq.Rmd
3d42b150eccd6a17e731afbbeeb66248 *vignettes/BLASE-for-excluding-developmental-genes-from-bulk-RNA-seq.Rmd
b42e196a103cc08d36b621959ec6dafb *vignettes/assign-bulk-to-pseudotime.Rmd
