38a00479fb82624a6fb46549e562cb26 *DESCRIPTION
52e8a96d58ed23a1de39d4cc1c668aa2 *NAMESPACE
dd9c93283ce833e12321d73f0ef8819a *NEWS
12db7793dc980dc7c7671ee601dd73f1 *R/AllGenerics.R
2a779e9eb9171e26c8ca26999a4f29f0 *R/addStepping-method.R
1b529df524d94fda18ff7ef5b59c8605 *R/aes.R
a7cf7630600c9446316cf9b7109c5f58 *R/biovizBase-package.R
9a4d4cd7b57118b51e5ec977e4ee0cf7 *R/color.R
fbf1059d67f4559af396975e341b5e56 *R/coverage.R
a9b4d33cd30c2ff5d7e45907a95e0b29 *R/crunch-method.R
756b13c620f0b0031edd1a6d2ce65649 *R/facets-method.R
b68450019f324a067fc2a2bf10d66c9d *R/getFragLength-method.R
4e673b6d5223cf402823915bdfb4fe1f *R/ideogram.R
18ffd4e3968f389b07e0715269e6f024 *R/labs.R
0f1b132c089f7e55d5a728193e932ecc *R/maxGap-method.R
1adc11ee32f275c4ae0b39d9efe24b11 *R/mold-method.R
ae516838f5765ed316580cf6469b8acf *R/original.R
a9d5624a119b2b2535036fa8e0f5558b *R/pileup.R
a9155a68a6e9e5bd4cbd67b3b5eec7d7 *R/scale.R
9dcd9dd129fa112a08e0cb4ccd97da53 *R/shrinkageFun-method.R
f1d44051b29522c4a2d840d2a8f8a59b *R/spliceSummary-method.R
1c0122d59cb39256f2a1b32738a10779 *R/transform.R
a335d9378c3f62023e31fd801b17da1c *R/utils.R
4ed08637011b846559843b626a2d8a75 *R/zzz.R
8a9a81ff8f90422a4d916605ded33aa5 *build/vignette.rds
84c17b78ad8f511a2b446ed0147e8c32 *data/CRC.rda
126aebc0ea87c7b0718b5d58b7d4a8f7 *data/crc1.GeRL.rda
0ba1b2a8c7fff29bb6a2d89c32078eae *data/darned_hg19_subset500.rda
d277df585d0609f4abe071157ba17bbc *data/genesymbol.rda
3ca2a66d1239ff7002146a73180481dc *data/hg19Ideogram.rda
2ff9de94aaf85cd74b00842e4dcc3e72 *data/hg19IdeogramCyto.rda
dcf41a42a3f69181334b0034dc4895e2 *data/ideo.rda
9db19f5e146889c82475fc33ab132163 *data/ideoCyto.rda
dbe9bfea17e291d0bd68a2bdfbd53923 *inst/doc/intro.R
cf4199acd172b12927d0f7c8fd2ad7d2 *inst/doc/intro.Rnw
6004c60b303803b21709ccd2eb87ce13 *inst/doc/intro.pdf
e2adc8b3115d364ea66ec716a9957d4f *inst/examples/color.R
7d2ed09dc97dbcb909a3ebca73164fbe *inst/examples/data-gen.R
5bcf16923155b2549a99b19bac8821e7 *inst/examples/test.R
64de605f935c2b4617249336bb51e48d *inst/extdata/17-1409-CEU-brca1.vcf.bgz
b1a01007a38922a56afa2f7c9a8e0774 *inst/extdata/17-1409-CEU-brca1.vcf.bgz.tbi
a88e58dc3bc0a60a47be1b88ce9cdf74 *inst/extdata/SRR027894subRBM17.bam
b6366f4133ce4fd2db15c9211a2d87a8 *inst/extdata/SRR027894subRBM17.bam.bai
b333aee45f7d5096c8c4f58b487e0108 *inst/extdata/crc-rearrangment.csv
b48b753f73f4871df1f1f24ca00b2750 *inst/extdata/crc1-missense.csv
0b356c4a78e34b78c193887a7abdd302 *inst/extdata/plink.assoc.sub.txt
9cd901cea7be72c0f7d28a97905a2ec4 *inst/extdata/wg-brca1.sorted.bam
5d7821fe92e4c36c3a4eb47a081caef1 *inst/extdata/wg-brca1.sorted.bam.bai
c2ee4c5432238b86e6c3d9113b8f4743 *inst/unitTests/test_ensdb.R
2a537442ff325efd853338cd8c4acad2 *man/CRC.Rd
ea5567c2939cc6a9a6664c25f176d526 *man/GCcontent.Rd
2be21a70adde515970794be49d0c3b21 *man/addStepping-method.Rd
fc0ccd9d7391984481b2227047ed4144 *man/aes-utils.Rd
2129b7ddac7bf9376cce126f5e9ee1c7 *man/biovizBase-package.Rd
b096e9d8b3303b917a1256482e8bbb27 *man/colorBlindSafePal.Rd
cfd9887e5ce14975d3cb0b3f3104f498 *man/containLetters.Rd
08d71c5cbf9e95475bc9afdbcc0683ad *man/crc1.GeRL.Rd
d3680e3b6cb1bf2e01cc66042960f518 *man/crunch-method.Rd
265ce09ad54198fbe2d7118e326eda04 *man/darned_hg19_subset500.Rd
5c4d8147836c65c146003186bd87ff0d *man/estimateCoverage-method.Rd
f894b720543157ac6bb967cb93792364 *man/flatGrl.Rd
95c51ce596483641d6e69451432f6fd5 *man/genesymbol.Rd
39728a8accd298cdce5d293c5cb972fb *man/getBioColor.Rd
5cb54905fa52fb9a548c855facb77bb3 *man/getFormalNames.Rd
6c13a5ba268c72650abe0f6843103134 *man/getGaps.Rd
dd3f597fee039df13db310f0d46ba0c4 *man/getIdeoGR.Rd
1f5a51cee502a158d4644e04072ebf96 *man/getIdeogram.Rd
190662ab55edd77da07ec3ac00d8f681 *man/getScale.Rd
d56602b5ae115350ee9ab9f73dcb97e4 *man/hg19Ideogram.Rd
31764f63fb56bf3e00326923a61d8caf *man/hg19IdeogramCyto.Rd
1e8a07cb86ac2209d46f676e401e87a3 *man/ideo.Rd
47423ed076a9be4e1556be4a3c68ccf8 *man/ideoCyto.Rd
097c95d60b9b370ec1751143c7dbed9c *man/isIdeogram.Rd
eb84f956d3025ab7226a8b6719555854 *man/isMatchedWithModel.Rd
a8227e2e7a918ff444a7c0c14f917cd0 *man/isSimpleIdeogram.Rd
929a8c7b8fdca369ef03573c77c29b88 *man/labs.Rd
df0289123147d83edcdf6fe4c0653952 *man/maxGap-method.Rd
d6346c8b927a019f8c04dc3b9fa1a1bd *man/mold-method.Rd
a96ceb312b15951e2544dcb4a8ad86a4 *man/pileupAsGRanges.Rd
2cec663532ce23d59d90ccfaf827bf4a *man/pileupGRangesAsVariantTable.Rd
a0b5fa6b4d1e5f052cf656915ceb8fd3 *man/plotColorLegend.Rd
5792465f2a82ff27883ca9fb44fc4e19 *man/scale.Rd
fa5aae1bb7beb22aad5cea225d748de3 *man/showColor.Rd
e4dc691b641822a59d32549bdaddf355 *man/shrinkageFun-method.Rd
c2d82035d8906b33f0119a80d486b683 *man/splitByFacets-method.Rd
c42c06749bfa8abf38d2fdd35272efe4 *man/strip_formula_dots.Rd
942abc46d276f8ddf35fe4f8ba34957d *man/subsetArgsByFormals.Rd
26d581fc06d3d30eec865ba866417fd7 *man/transform.Rd
cc5017167bff21898e3fd5b8f8f7536f *man/transformGRangesForEvenSpace.Rd
1d08194d989b2581aa8b1ce15de3340d *src/R_init_biovizBase.c
13d1436427a5f63a0a5bb442d8a31ec3 *src/bin_offsets.c
e13572721bfed85166e1834e413701b1 *src/bin_offsets.h
7217a610e95f4d36aea6a5b174771f39 *tests/runTests.R
72748c7c7487a449bdf46e9a045902a3 *vignettes/intro-shrink-single.pdf
a7c6812d2c8ca81105fdd5fdc01671bb *vignettes/intro-shrinkageFun.pdf
cf4199acd172b12927d0f7c8fd2ad7d2 *vignettes/intro.Rnw
