226cd84b5886f5b31ba7eb26092d5ba7 *DESCRIPTION
5e40ee771e84d89b198eeef85eef8314 *NAMESPACE
68fc3728e3ea3f262add4da91253efb8 *NEWS
e77f8b27bb1804b7419a1b979b6d04ea *R/BiodbConfig.R
d5dc40b88df727bbea40d8dac00cff80 *R/BiodbConn.R
6177e1639d3085f1b010a80ab234cb64 *R/BiodbConnBase.R
f1cb1bbff42fe9936c11047175ddf1c0 *R/BiodbCsvEntry.R
f5b4db2ba2c19c2dfdf2470e9f85c4ec *R/BiodbDbInfo.R
4e2962362ea536167b80d0ed9c856a74 *R/BiodbDbsInfo.R
9b8f2e2d21bc5e0adb2739ef8b91a753 *R/BiodbEntry.R
0221570bb26b287952ad600c99dbab19 *R/BiodbEntryField.R
6b9e7ae4b5f8de21d5cd1cec34ee6b32 *R/BiodbEntryFields.R
81c37136798dd54a044cac22cc05c865 *R/BiodbFactory.R
d98a1137782dd5ad990c5e660da09b67 *R/BiodbHtmlEntry.R
eaddd8335496fb4f219b2afdd2d64b9d *R/BiodbJsonEntry.R
3ee8c74d4810eef2fb10ce26cc32e79d *R/BiodbListEntry.R
fcd67e23d02f196196ec8fde281fa48c *R/BiodbMain.R
e588c7da4199a9d666cc940fd76d2772 *R/BiodbSdfEntry.R
c3d6a7e9f1dc4e03729d0f1779b895d2 *R/BiodbTestMsgAck.R
d583cc6f58140b441e0ef3d970210c99 *R/BiodbTxtEntry.R
7bae17ae633bfdc7cafe2eb075037ecd *R/BiodbXmlEntry.R
9a5c7a60be9c48216e7aa0eebd9b52dd *R/CompCsvFileConn.R
4ca338ce386adb7cd64beb3d31376217 *R/CompCsvFileEntry.R
91bce649fd40c09d8e099d57edc9754c *R/CompSqliteConn.R
9d6b7ea8e27680955ed34cd76c431cac *R/CompSqliteEntry.R
da2110e267d8f4c58636b29ad4f94d65 *R/CsvFileConn.R
8860ec97e928df7ed0d0b53ef62c3b1d *R/FileTemplate.R
269cde82647db39131c89c513c993506 *R/MassCsvFileConn.R
051afd2bed712fcdbdf656d0266cf951 *R/MassCsvFileEntry.R
4dc6dffa984aa78fbae9b2594357cbdc *R/MassSqliteConn.R
0c93cc75f7d9dfd07a94d1ea02f57e7b *R/MassSqliteEntry.R
626634b8b6d26fc5541ff32dcc681f1e *R/Progress.R
a9974b6a4be92ad3ca9d5c4715e51272 *R/Range.R
abba839469513798223a34583202210b *R/RcppExports.R
f3b2abcd15fd79617409d64345b77a06 *R/SqliteConn.R
0860da62261a6b8e0cf1998d086012d0 *R/TestRefEntries.R
84fb32405ab6c7f5ebea0d9962267224 *R/catch-routine-registration.R
1f81e89ab9d7caac6571ef4ab2db29a1 *R/fcts_biodb.R
2b39e6737dae4f8d3e0139e952126cf8 *R/fcts_deprecated.R
0c4050ef63cca28f3a90aca8f04475c8 *R/fcts_mass.R
be752bb7b3b2bb9af8a96651ccc8d945 *R/fcts_misc.R
5581465b1fa4e57df21170726ae4b671 *R/generic_tests.R
d9077c5e69415821db5b6169f4770c69 *R/package.R
16f67f136b1a9886caf658e1901022f7 *R/spec-dist.R
310c9a122c176d93cf117361ee8e943a *R/test_framework.R
4ea3e9710240a4b517c9f90ffbf9fab7 *README.md
9796e2e6c9fccfc98979a33919903526 *inst/CONTENT.md
365a5394cdbf6c6c8ff2620662fc9734 *inst/definitions.yml
90f20d9f5da8a08c88edd644a2d320d3 *inst/doc/biodb.R
7ede715e6fc45955559f09578cc606b2 *inst/doc/biodb.Rmd
f0e3789654fa993139aa2a50aa9dc46e *inst/doc/biodb.html
7964a6821b064a00b54acbb96371dd08 *inst/doc/details.R
fd2c3ac1b07046471baa87633484d18e *inst/doc/details.Rmd
fc553f2b97da5ffbf5cb58a04abcc366 *inst/doc/details.html
c32e2965ac7abe01f3e283f95c3923c0 *inst/doc/entries.R
5cbe042743d072dbf33b3591a42b023e *inst/doc/entries.Rmd
152c2ec1b5fcd4f2c59cf6899421499c *inst/doc/entries.html
388f60cf89cb250ffd14237fec8be38f *inst/extdata/chebi_extract.tsv
435335798d7504a182a378b5b7621d69 *inst/extdata/chebi_extract_custom.csv
659aafbf6cd7e4ddd4272ca77e41799c *inst/extdata/chebi_extract_with_unknown_column.tsv
5b76b0eef9af8a2300673e0553f609f9 *inst/extdata/entry-comp.sqlite-1018.json
c8c74ec0d9f4fb8b0a8e2fd9dd06bba6 *inst/extdata/expasy_enzyme_extract.tsv
fb9f35818824ed36c5264dbb7ff5fd0d *inst/extdata/generated/chebi_extract.sqlite
74ee1f1ce414e3845d7007d6dbaa8b17 *inst/extdata/generated/massbank_extract_full.sqlite
168d7425e225c4c2ac5701883972eae6 *inst/extdata/hmdb.yml
696868ba95e2c02bba3975d8ca735f0c *inst/extdata/hmdb_sec_acc_def.yml
0e8581a08159fe25ed934465adc3374a *inst/extdata/massbank_extract_full.tsv
99dad5c8c60d07f90b836dac571e3f2a *inst/extdata/massbank_extract_lcms_1.sqlite
72b716d603c78ffc25d0caf5b5fd9fe5 *inst/extdata/massbank_extract_lcms_1.tsv
47fb6a35030f8ae39776fa87d1f1a01c *inst/extdata/massbank_extract_lcms_2.tsv
7c867327ef44658343f19a19cdeabb74 *inst/extdata/massbank_extract_lcms_3.tsv
f5721e7db227bb39f95e57fb0c86cb63 *inst/extdata/massbank_extract_msms.tsv
2c59651ef27b88fc8a6b9de05d8c9a66 *inst/extdata/ms.tsv
71c0edc8a44969e56b094ebffb3fe423 *inst/extdata/uniprot_extract.tsv
f6257aecf26b51e45b34f47e6ae8024d *inst/features.tsv
78cc5f19c51ea9ead7968d3f682f8271 *inst/testref/chebi_extract_custom.csv
02e4f2adeab3fd1e4228ff2ce735af03 *inst/testref/entry-comp.csv.file-1018-content.tsv
0ad7973d947e8e5dc6352e466d67917c *inst/testref/entry-comp.csv.file-1018.json
867616876e4625e0f426ee578696d653 *inst/testref/entry-comp.csv.file-15939-content.tsv
88c633fdb299d02afd002937beacec54 *inst/testref/entry-comp.csv.file-15939.json
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9ba38e8972f9d1179dbf16926fdf5a19 *inst/testref/entry-comp.sqlite-1018.json
d7ce107c85469b22ae1c7829d903be97 *inst/testref/entry-mass.csv.file-KNA00776-content.tsv
ca2e59e4b3ac7e45bc1314856bd1a711 *inst/testref/entry-mass.csv.file-KNA00776.json
376d7bfdbc7735d2bf1d181dc7450187 *inst/testref/entry-mass.sqlite-KNA00776-content.json
ca2e59e4b3ac7e45bc1314856bd1a711 *inst/testref/entry-mass.sqlite-KNA00776.json
c7447e70a83f39665359518ffd01d034 *inst/testref/mass.csv.file-wrong_header.tsv
78a73c553c50e4f173e4f8304c8c03bc *inst/testref/mass.csv.file-wrong_nb_cols.tsv
447fd49b442be3be08f10eccf72e80f8 *inst/testsrc/db_creation.R
ef6fc675daa5bb67697de1d86abdc50b *inst/vignettes_inc.R
aeda29ef7a7cf698f1fc1f223b69aaf9 *man/BiodbConfig.Rd
23e7059f9b33ee350fb87896bc60efae *man/BiodbConn.Rd
6836f26e486bf080f9ef8b09fa924c0f *man/BiodbConnBase.Rd
e5de41b5dea513ec952cb525311fb5ee *man/BiodbCsvEntry.Rd
dc34a81aa400900866785d415b71422e *man/BiodbDbInfo.Rd
5d6673754b4ab2d037a166fff165795c *man/BiodbDbsInfo.Rd
129ae7f7d8bf90ba66e025ae54875aba *man/BiodbEntry.Rd
ad5ea78d4408b6ece9a97f73667f19ea *man/BiodbEntryField.Rd
b1167347a4367f8ade21e8ef779fdc01 *man/BiodbEntryFields.Rd
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9d4201d2a59aebe0a4f4da358c5e6cea *man/BiodbHtmlEntry.Rd
0f5f06eaa70b97325fd91d91b14ba58c *man/BiodbJsonEntry.Rd
e8ffe7dce7d210399b5eecdf081ce5da *man/BiodbListEntry.Rd
a61d7ea2251fb6fcd9b43884090fb754 *man/BiodbMain.Rd
12429f11f413bafc5874e4326a2644a8 *man/BiodbSdfEntry.Rd
148d5d07de44f4869e6921cb795e0345 *man/BiodbTestMsgAck.Rd
892c059b989b34803c36fa0511d6b187 *man/BiodbTxtEntry.Rd
45f01bf4325c8985ea280f271743c5fe *man/BiodbXmlEntry.Rd
b4ec6fc08744b2ca6cb3e0223d1ed190 *man/CompCsvFileConn.Rd
7772deea9f5bfcfcbf5d252e1a27b950 *man/CompCsvFileEntry.Rd
66596a6392ec00da1224cc23c1987bdb *man/CompSqliteConn.Rd
df0612e790c032a86a7394513a610a3d *man/CompSqliteEntry.Rd
75971e062ef80fb8cc4b2aeaf9280085 *man/CsvFileConn.Rd
464b516fcbed21121ec76f47aa2c7efb *man/FileTemplate.Rd
f0c9f9b9ec349bb63c492d98f3e06102 *man/MassCsvFileConn.Rd
4dfb10b2dca6c595bc735f37b8725610 *man/MassCsvFileEntry.Rd
1d1a7e0f09cc3a883a38902bee447e2b *man/MassSqliteConn.Rd
128b720a7f72fe2a065d330317ccf6b7 *man/MassSqliteEntry.Rd
b95c14864e37c41c82ca6d8c89101d39 *man/Progress.Rd
43bf33001de4d4fa5ded953e579ba6b7 *man/Range.Rd
9c42d643635215ddc98bd32b602a75a9 *man/SqliteConn.Rd
13baf8cb42585908b0c7fa083943ad29 *man/TestRefEntries.Rd
a70a7b654cac78f53911181329032de2 *man/abstractClass.Rd
248881cab48afd2499160b44eea38195 *man/abstractMethod.Rd
4676534b4753a1b66b1c515394a174f5 *man/biodb-package.Rd
1de2eb05ae0e0412629614c6b02e418b *man/checkDeprecatedCacheFolders.Rd
60648dc068363574c4aa6044b7c552e2 *man/closeMatchPpm.Rd
0e3bb4380345a783ecbd5a75239d85bd *man/connNameToClassPrefix.Rd
9a8df5379ea852c9d83edae3296d434f *man/createBiodbTestInstance.Rd
5da8e6183d6e8e96dffd69b2fbadb982 *man/df2str.Rd
cde29fcfd08a5c46930a40f0d38c8726 *man/error.Rd
b339998e99ed367be52c2b3a1a1c6f10 *man/error0.Rd
f871e9d3f5444d173b1e871645722754 *man/getConnClassName.Rd
2f0c84327327a14d1e0efe15bc53d068 *man/getConnTypes.Rd
3ea7f01ec4394fa7b6fc39c0ee85195b *man/getDefaultCacheDir.Rd
f5b54272f9aa6929749ed14e84de2215 *man/getEntryClassName.Rd
b4547105b5c56a2f9a0bb001e765fe0e *man/getEntryTypes.Rd
ea9256f08e5aee0ee1aa21da150bd5d7 *man/getLogger.Rd
73e88e6c6beb3b3be5fd58fea0ff713b *man/listTestRefEntries.Rd
88af794d4dfd35b7049535c89343a2d8 *man/loadFileContents.Rd
c464055496a1095f5a314e13e6a7efbe *man/logDebug.Rd
c2279c9161ee47cacc17ba4360a040a1 *man/logDebug0.Rd
a2db47789dfa5c46fea3f2ce1ac26282 *man/logInfo.Rd
f46499e4a1da868b9952dba8f36b47ac *man/logInfo0.Rd
9e4e745a4066ccbbcc73145d94d5298d *man/logTrace.Rd
9a3eec9cdcb0e3ca4005170ccb165b5f *man/logTrace0.Rd
b2df5cb47a1c28f213faddaa875cdf51 *man/lst2str.Rd
f74238d26601febd1cf356f76088c7d0 *man/newInst.Rd
1ac078db0119bd0ef7c38837f932a7db *man/runGenericTests.Rd
08beedc82a37023ff247339b57963ece *man/testContext.Rd
7a86ee43234e8c9d95535b1837f086c3 *man/testThat.Rd
320b75aa1adc621625f54fe8ba2d43b0 *man/warn.Rd
2b2eda2ef35153f396ba57a2e7232bb4 *man/warn0.Rd
1c63c80839b5945ae0fd2999ad6bb62b *src/RcppExports.cpp
9a7fea7569dda1f4ec7f13a19ec1203f *src/closeMatchPpm.cpp
07ae5732f970f6142e7edcb1c5451e61 *src/test-100-ms_matching.cpp
c2cb0c30e10da611f9fbe56aea52f7a9 *src/test-runner.cpp
c6ac576c33e494def1e3f9334002c48e *tests/testthat.R
42023193a867efcf2648bf2dac6a5f3c *tests/testthat/test-cpp.R
417be573441583a97e999d5564da67cf *tests/testthat/test_001_init_logging.R
0d3b2b3d18af97264d3dbd0acfa473f5 *tests/testthat/test_005_abstract.R
9804ce450b0911f63ac1ca7814f78a14 *tests/testthat/test_009_range.R
69647c460b849a8fdd80b495640ddff9 *tests/testthat/test_010_object_printing.R
6c12643fab5af4f63a69893107fa06c3 *tests/testthat/test_011_mass_fcts.R
225fa745f6c7b1817cb5ded96089564c *tests/testthat/test_012_biodb_fcts.R
954f04001fd3943bb925e7bf25f8cd2d *tests/testthat/test_013_misc_fcts.R
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a05b3d3e957ea73123a9f070d0fa7b4b *tests/testthat/test_020_config.R
eaa4eeeeb9ef9ca87c74dc415358776b *tests/testthat/test_030_biodb.R
2ac6f61374b0c48c30e02db854b72bee *tests/testthat/test_031_dbinfo.R
83d51a6a340c290e6f7676d29fab1c67 *tests/testthat/test_032_biodbentry.R
d18cbb77f5742061ea18d13bfcabc484 *tests/testthat/test_060_entry_field.R
49598505849009361fe9a28a41dc8bea *tests/testthat/test_100_comp.csv.file.R
e84383410be20d02bfe726d4c7685894 *tests/testthat/test_110_comp.sqlite.R
1bd372ab3a648ad15e62d7351051cec6 *tests/testthat/test_120_mass.csv.file.R
6cca8fa260298553399767fe6db26928 *tests/testthat/test_130_mass.sqlite.R
a38c6c83941c3ae20eb73e0784e3895a *tests/testthat/test_200_lcms_annotation.R
7ede715e6fc45955559f09578cc606b2 *vignettes/biodb.Rmd
fd2c3ac1b07046471baa87633484d18e *vignettes/details.Rmd
5cbe042743d072dbf33b3591a42b023e *vignettes/entries.Rmd
e1dcff178090995de2113f3bf3ad61d6 *vignettes/references.bib
