e0aa499e817d6eb1d4078a57043a9948 *DESCRIPTION
2dfbbea1f45e363253a8f070d3dc1953 *NAMESPACE
f22ada003b1a806adb01bf6873501e9b *R/annotatr_data_doc.R
1a23c2589ebaf003669387f51b461624 *R/annotatr_package_doc.R
e4f6be9f93719346f4caab3b5c2ffadb *R/build_annotations.R
8714ffa7e750d412dd48a922cc4befbd *R/intersect.R
9a29e125a998347647a38057e56d4df9 *R/randomize.R
2e605d928afaf3beddebf75a89c8a641 *R/read.R
2ee49d2110f8816d5edf890780775a12 *R/summarize.R
7d9ff3e507cde5ac282b44271328286a *R/utils.R
ca47bad54b25034f44d476958bef0720 *R/visualize.R
d30a9ff183d18a19266c3110c9ff15af *build/vignette.rds
4dd6f8386db24713b88b1c770319ab6e *data/annotations.rda
db526925c221df84ecd0d39c41d761c5 *inst/CITATION
051a045486de8381330656967f64164d *inst/NEWS
ef40774fed928f5da85ba139c2512269 *inst/doc/annotatr-vignette.R
77e16b27f6983ae50b4a9296df56e6bb *inst/doc/annotatr-vignette.Rmd
c4b2fc7d824646b4688d6e495380d529 *inst/doc/annotatr-vignette.html
fed4a9edb1150d797c0163d4d5a0119d *inst/extdata/Gm12878_Ezh2_peak_annotations.txt.gz
70bfc837074aec2dffd69ba93bb271d2 *inst/extdata/Gm12878_Ezh2_sorted_scores.narrowPeak.gz
cb5c5f3301f220c56b26f4720134fc3c *inst/extdata/Gm12878_Stat3_chr2.bed.gz
494296664a2b901a048c898f453c2651 *inst/extdata/IDH2mut_v_NBM_multi_data_chr9.txt.gz
b8dadbe4e14e6fe2f8031d1ac877b976 *inst/extdata/K562_Cjun_peak_annotations.txt.gz
7367723da86cce42aefa8f7af17bab15 *inst/extdata/test_BED3.bed
eb405a8b7d705a07016c7dc6d0688313 *inst/extdata/test_BED4.bed
649d21ede4822991563aa96068578d26 *inst/extdata/test_BED5.bed
b8d7e23032b391ab3f13891340214ebc *inst/extdata/test_BED6.bed
a023bffd97b470093281d86ccb834981 *inst/extdata/test_annotation_nooverlap.bed
838213dae0d5efe1432125d0717d019c *inst/extdata/test_annotations_3.bed
750655c552d5b9aed4713f594a2b1e2e *inst/extdata/test_annotations_4.bed
aeacdfe0ddcb27537a36241a49223423 *inst/extdata/test_annotations_5.bed
c720f05968877a756c334e6e229033a6 *inst/extdata/test_annotations_6.bed
b7eac897074b6684ec987373f32d0660 *inst/extdata/test_annotations_6_gene.bed
16be7e568652b9c296f29eea19c8821f *inst/extdata/test_annotations_6_symbol.bed
2599eef777f61581fe45ae8e8c757169 *inst/extdata/test_annotations_6_tx_gene_symbol.bed
45a4768bfed51ecf3b1a2536272cea84 *inst/extdata/test_annotations_minoverlap.bed
cbfcdd53f60e4f67d5c146374b953543 *inst/extdata/test_bedGraph.bedGraph
28cde637d60e9888cb5a77ba96614c99 *inst/extdata/test_intersect.bed
41c84c319c0845bb29ab2616999fb3d3 *inst/extdata/test_read_multiple_data_nohead.bed
ceeba8dfa11e5cec33d8fd8928e5c51a *man/annotate_regions.Rd
1bd69b86161282b2e982afb5ba42be21 *man/annotations.Rd
10f8beca150bc7d2396a2981720de1ce *man/annotatr.Rd
af7deef76364344a30f18688b9c01e31 *man/annotatr_cache.Rd
cb1b0c662a37481202b756da22f0aa95 *man/build_ah_annots.Rd
216ff6b25304d5f2a3f9d7651008e066 *man/build_annotations.Rd
64286432fecfdc4a68287ff9abecb84e *man/build_cpg_annots.Rd
473f4fff364b0e26397348afd52bf72c *man/build_enhancer_annots.Rd
14ebb20db09b109621f64bbd885fa17f *man/build_gene_annots.Rd
61f8d76e435c50748b061fcf0828635b *man/build_hmm_annots.Rd
377f6de911b71300ad98e0db53de66ca *man/build_lncrna_annots.Rd
a13eaf9a0c8fb6d5730eec748f924846 *man/builtin_annotations.Rd
93bee877b20ab357794d8a971e88bb85 *man/builtin_genomes.Rd
8b2904868f685125d0a20d26cafc9384 *man/check_annotations.Rd
9fa681c4c5fd5d1cbe1b1f194dc179cf *man/expand_annotations.Rd
af26624c5a144e7fe95d872ebbb1d5a6 *man/get_cellline_from_code.Rd
1f61c1c41c4c6ab63f1b7addfa9fdd5c *man/get_cellline_from_shortcut.Rd
dec954e4f62d3e627576969d5794af9c *man/get_orgdb_name.Rd
9b03df3a81c6035b310bbf53e28fe24f *man/get_txdb_name.Rd
82d00668f2d6249b4a8ccc5ed8548f2e *man/plot_annotation.Rd
41378eaec0f4d6300e04a1170466aaec *man/plot_categorical.Rd
29964aa91e5360db6b4770e550ce5038 *man/plot_coannotations.Rd
67915ae0f79fe7d43b69bd05969000af *man/plot_numerical.Rd
88bdbdcab67019248c38249690ec2848 *man/plot_numerical_coannotations.Rd
82c5803ebb5342c6e22b7d740723831b *man/randomize_regions.Rd
43f6a780d3c4ef5732a703177e28e950 *man/read_annotations.Rd
5b17c95dbf2262b07661182b3a5aa1b7 *man/read_regions.Rd
7abe4ad40a017ba84ce68afe559a90d1 *man/reformat_hmm_codes.Rd
9f0884a46ce825a304805c2f46a58b96 *man/subset_order_tbl.Rd
d55aeb977d66bd0420c30e9f1efc75d7 *man/summarize_annotations.Rd
63e622689865ef12e7bfa5da4c05564f *man/summarize_categorical.Rd
2e5835ddedefacba90b400e21a56d8bc *man/summarize_numerical.Rd
9c5e2685fc5f0ba5aedaae2ba67255bc *man/tidy_annotations.Rd
489854a98bd84d030cdd2f01ecc52b08 *tests/testthat.R
bd674154cfd9a7ad40ec5fc330660f73 *tests/testthat/test_1_utils.R
0475a4b26a9f83111a2590d30e99bb73 *tests/testthat/test_2_read.R
c1355b2296eef9356250cd75635dce0f *tests/testthat/test_3_build_annotations.R
08baeb59582442d3ab474b630ca494e9 *tests/testthat/test_4_intersect.R
0129505255638e00aad77c44d791dffd *tests/testthat/test_5_randomize.R
2b0e9a9911073880f9a7cc43f76a1bda *tests/testthat/test_6_summarize.R
c5b1e1bf2948ae453c15e8b96ca93765 *tests/testthat/test_7_visualize.R
77e16b27f6983ae50b4a9296df56e6bb *vignettes/annotatr-vignette.Rmd
9027b49090838657bcdc4783a7a9912a *vignettes/annotatr_cpgs.jpeg
34767cb0495a65aaafa0e691cf805433 *vignettes/annotatr_genes.jpeg
