12c946a6940b03fb62ffd9bae6489992 *DESCRIPTION
1939d47919102d4a5b978a2c2ff063ad *LICENSE
b19efbc0da226f982074ac664e7bc686 *NAMESPACE
b0673b4d40a372db08c1ada17517a2d9 *NEWS
22d3cf1133c6172f3a1dd0a2e72c66eb *R/Ularcirc.R
f113c80d482e4ff938de8e99b7a7db39 *R/Ularcirc_miRNA.R
36477da3e120c435e45bf4fbd3586a05 *R/Ularcirc_plots.R
7c0e8688497cda4d882d1900d313fda5 *R/Ularcirc_standalone.R
46e44f62eb0177e2419599a1b330812d *R/file_io.R
b60d6082095081dc587a7779ee3e6ddd *build/vignette.rds
86bc7f0acea37b227436f4550bcd044d *inst/CITATION
693bd34bde1b9e2aa9518485942a67b2 *inst/doc/Ularcirc.R
dcdb683863a511615010bacd8ec7c14e *inst/doc/Ularcirc.Rmd
184177a25ead6dcf510dfe62067e8f9c *inst/doc/Ularcirc.html
33827baa8acd2683762a01c0d083c329 *inst/extdata/SRR444655_subset.Chimeric.out.junction.gz
fd1b8331b2cc9617d732ab3b1d959f50 *inst/extdata/TwoSzabo.RData
35fbbede0739172b840828c8475f3fc0 *inst/extdata/extdata.txt
29f09e396c37e4cf010ce4c7f2cfdeeb *inst/extdata/extdata_backup.txt
fe545bd2326019ddd5eddacda9f5d173 *inst/shiny-app/circRNA/Global.R
861d5c2d31edbb694fd622bda60c5c11 *inst/shiny-app/circRNA/JunctionComparisons.R
7381e124c4b11772c285c2090c05b1c7 *inst/shiny-app/circRNA/Server.R
e2a6bc4cff870c8919f7e38c36112364 *inst/shiny-app/circRNA/UI.R
c8a5875a0bb60ad97e6a72f79c6c8137 *man/BSJ_details.Rd
2fe62c7d3d00da2187830efffbeb78eb *man/Compatible_Annotation_DBs.Rd
9a6a5037afa3c6b3b6311139c5090a84 *man/FilterChimericJuncs.Rd
ff010124d394bb213f3eddc19224543a *man/FilterChimeric_Ularcirc.Rd
3fe77af7d2331c373bd1c9b658237f58 *man/Junction_Sequence_from_Genome.Rd
37721e111166616fe610bcf2e68e41d5 *man/RAD_score.Rd
31f7973cd8b06706384ab9fa9d978c93 *man/SelectUniqueJunctions.Rd
ae2ff92f18eaff406a26fc91d8976f18 *man/Ularcirc.Rd
941e6c9c54d8014449e5f9325fac5ce4 *man/bsj_fastq_generate.Rd
5b3a0fcccc1c3dc045d82979e7a4b080 *man/bsj_to_circRNA_sequence.Rd
d9d45245a5e4f5b3d22154e03d04810a *man/chimericFilters.Rd
fee4d41c0f993ea93ad9a410299261a2 *man/chimericStats.Rd
6815e68bea9c66fb2a76254bc97a734b *man/circSequence.Rd
239860cb4d5471e088b9b68ae310a79b *man/loadSTAR_chimeric.Rd
b21d66f0d0ed6e82a6c532ec217807ae *man/load_miRBase_fasta.Rd
7ac0fee7781e74cd5da2e563726b2e92 *man/miR_binding_site_Analysis.Rd
70f4b3586e69c52965feb3af6881bdc0 *man/plot_AllJunctions.Rd
d90f962c51aa22353b2d8a16d9384fde *man/sequence_from_exon_coords.Rd
f2074ccde29c358560b510ea7a42daa0 *readme.md
dbcf0596c6d2a4b6868496f8fc3fd172 *vignettes/AnnotatingTwoSzabo.PNG
6f3c4ed209a1cf2c0532f404e700ae75 *vignettes/BackspliceJunctionDetails.PNG
bdd67aadd4e0062e804ddcbc21d47734 *vignettes/BackspliceJunctionORF.PNG
e015879c23cc32f7fbc7f8f9ceef4165 *vignettes/BackspliceJunction_miRNA.PNG
27d654186d92a8cb3f8151aed374463a *vignettes/DisplayFilterOptions.PNG
70743e73f9f2a7e2827968f9b3e56cc9 *vignettes/HG38_Availale_Databases.PNG
ed299ceee42f350a5f6fabee4cd060d6 *vignettes/IntegrativeGenomicVisualisation_Slc8a1_HG38.PNG
09a6da14c1424aafeb814bbe37a15638 *vignettes/ListedSampleIDs.PNG
17918288772f71e8cbbcf23f82626e3d *vignettes/MainPanelTabs.PNG
b563dad77fa9af5f4468c525e6f3f0a6 *vignettes/SLC8a1_TwoSzabo.PNG
dcdb683863a511615010bacd8ec7c14e *vignettes/Ularcirc.Rmd
265be9c0d85550255719fa658460783d *vignettes/Ularcirc_genomic_filters.PNG
