37b7f7ebcf63802ae8f0e826b1bf0c9b *DESCRIPTION
8e62324e8b5af37a8b502de29fd417fc *NAMESPACE
1190ba13d5584744b91a6c24c8d6eaec *R/as.functions.R
c9043060adce322c7eb24cd31a526c56 *R/bootstrap.R
7b2b09884fab9f2d60e76c632db5cbc2 *R/caprese.algorithm.R
77c734b1cba2ab847202484f7bf0a1d8 *R/capri.algorithm.R
ed5fbdafe4c771fc9624b57c2156c7ca *R/capri.hypotheses.R
aa818136feae99195e17f6fa7485e652 *R/chow.liu.algorithm.R
2d554843ed233f58a3747f66b3877128 *R/correctness.R
2704a1fdb829bb5ce043fa852ccee128 *R/create.model.R
02f07c5c864553f81c443ffdc3968b29 *R/data.R
3a00713ea74151e22f78caf119ddf20b *R/editing.functions.R
8d87df3ed33a48ec18b28d492f9b3dcf *R/edmonds.algorithm.R
4562b168b2a92f783d44eb5dc645b119 *R/external.R
5e15d34b5dfdad7d30d448c941477bd0 *R/gabow.algorithm.R
8c4ea482282c1f7dfc4e4b8717a9b35e *R/loading.R
319b0f91704f01e61afd528b424e3291 *R/lregfit.R
e5d16010871d12082745263075de8452 *R/prim.algorithm.R
dda592eb267f1839e418500339f7fde4 *R/selection.R
858bb0571867fe5dfbfe9924d0080f70 *R/statistics.R
f5273113261b67111f61bd43b2eaf67e *R/tronco.R
cfbacf94f89645716024eb5e8a9200d9 *R/tronco.plot.R
b0056db1317e5015b45ef764e098f3e2 *R/visualization.R
42cfc69fc709b8f217b446621133e681 *R/which.functions.R
7848f5a36c7b7215cd4b41ae74da10b5 *R/zzz.R
b9446a86ab7b845f433bd7df61bab23c *build/vignette.rds
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69d7ca12c72f8bb53a79bc976b28c22b *data/maf.csv
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94711879cb0928b6a8e1cbcddc11fa5a *data/test_dataset.RData
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8eece8790f6c6d88e088611fcb29655d *man/as.types.Rd
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5f5dfb58d9fb1688ea34671108202878 *man/change.color.Rd
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01ba8895f6b19fc92748512b9b43261a *man/crc_maf.Rd
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4449397082e632620842b553401a468e *man/join.events.Rd
47238ff2016572b8e635cac789eb148d *man/join.types.Rd
56bde2ef09bb1a9713a5ce234f6f6f75 *man/keysToNames.Rd
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6fd867f2c814ba29c2aa45da154007ed *man/muts.Rd
080ce8205e4aaedfe0a75c18f18ea0db *man/nameToKey.Rd
531eb0445351f582fc60210e50e4fd54 *man/nevents.Rd
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9b06729e5f673299351aef95cb892a6f *man/nhypotheses.Rd
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cfd0969e553c5ce7e6fb2a661d8f8c50 *man/oncoprint.Rd
42e327f7b26e3983cc0e49ba85619c15 *man/oncoprint.cbio.Rd
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61fd5bb21dac1d3c76f191e7940a3c56 *man/pathway.visualization.Rd
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aa619b6fbfb99541f6a2f0727ee89dbf *man/rank.recurrents.Rd
1dd944fd435f924e0cac7b8077004f91 *man/rename.gene.Rd
30caa84f58e43712fff26cbecd464d82 *man/rename.type.Rd
666d4f89c0cedf1d3c78c700b0a91c4f *man/samples.selection.Rd
ab2de80977de5ce4b65cbc625150f3ba *man/sbind.Rd
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c55c41ec9cc6ae938f8cde9eb4b0f169 *man/test_model.Rd
2ce8f4172d0817de4683c0c074867aee *man/test_model_kfold.Rd
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aa03edede7e91be7138413dd1df84d10 *man/tronco.caprese.Rd
2133cea1327edbed3141de4135e71f52 *man/tronco.capri.Rd
aeb9d752ef12397d81b15ab57dd286a0 *man/tronco.chowliu.Rd
f73e496c02dd7a654d9c5fe108862fd7 *man/tronco.edmonds.Rd
82840ea734b262ae4d295f5b64c146df *man/tronco.gabow.Rd
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a5cc30cb1d017c9f99db82e1c76caec2 *man/tronco.kfold.posterr.Rd
662d2617886c7152e80a8af7d3559ea9 *man/tronco.kfold.prederr.Rd
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8618ac69f287b7bdc5365112ecb14472 *man/tronco.plot.Rd
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02950698db48a9a6dea5e9cd505d8930 *man/view.Rd
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9b766c7dba724e00addfb7d2ed7610f6 *tests/testthat/test_tronco.R
353ca81e6901ccaa55302b3e36bd5878 *tests/testthat/test_visualization.R
996be6959d89e850572c761f90b9a291 *vignettes/f1_introduction.rmd
8527a4d09afb8c08610bc79c60a8985b *vignettes/f2_loading_data.Rmd
4b399d2cfc6c9689ed39a84032770c6a *vignettes/f3_data_visualization.Rmd
074eae664d2b6096bb6c3e706a0878d4 *vignettes/f4_data_manipulation.Rmd
5c8ffec6ee17f4ca27faa4b4249677cb *vignettes/f5_model_inference.Rmd
ac368877f810be9ff8fdd18c299499bc *vignettes/f6_post_reconstruction.Rmd
db91975886be8c7e4e6fde25c50ac1f8 *vignettes/f7_import_export.Rmd
