8462fe734ae03ceb45ee23fe14b27a7a *DESCRIPTION
6e71d133d6faa65522ca0bec30fede95 *NAMESPACE
0743ea03134212b38e90275a17036ee3 *NEWS.md
a482e701b1c28d3ad43b96dec7bebbb4 *R/SPICEY-package.R
19ab1173db0d5252752f115fe07fb26f *R/SPICEY.R
98f5961bb5e8a219678a5ab7466e382d *R/annotate_re_genes.R
0f84acbca1bae29fa471c484995e51cc *R/data.R
dc90757ff4c93f89f9dc35c4375991d1 *R/link_spicey.R
f02b6fd4b99a35da6d440904d7b70a80 *R/spicey_indices.R
a737d23e2b45c5c2fdb97b9d06ab98f3 *R/spicey_plot.R
3d095b4ce606d2bc1b109a29d8f0f27e *R/utils.R
8d07b4a8eef789525bb550fb211c2195 *README.md
ce74c8ed29682fa6c1187dd3bb6bfa96 *build/vignette.rds
a3525ec6ce59bece20051e47e2b952e5 *data/atac.rda
ad0929dbe1030dfa476f37cd46ffb5f7 *data/cicero_links.rda
04f33dbf6eec4edf664164ce343c7026 *data/rna.rda
e9e962d0f4486936f05d5cb92a6364b2 *inst/doc/SPICEY.R
bfb6b885c9ddd83e63f1d233ade777e8 *inst/doc/SPICEY.Rmd
76298086d0b70e61f5673dbc9e8d5935 *inst/doc/SPICEY.html
cb1228da2bb61ac49e721c1f2ff33888 *man/SPICEY.Rd
6e2ea24ed552b143cbca004f2f001ccb *man/annotate_with_coaccessibility.Rd
b768f0f8fa63f6bae04914020f452266 *man/annotate_with_nearest.Rd
5f5d3f3071a06b94f1c990ba5a71b9e0 *man/atac.Rd
63c5db2918bf0e8aa7fd81e6f70da40b *man/cicero_links.Rd
a0dae3806741bdec58e1c9d3d47ecef3 *man/compute_spicey_index.Rd
849d95e1035b7754a5a1845c7098aee4 *man/dot-add_tss_annotation.Rd
304f71664871fec72ea91a12bfbda2c1 *man/dot-parse_input_diff.Rd
f03337c9e8214498e2801bf1058cf81f *man/dot-standardize_peaks.Rd
1cba4fba237208f20e94e18db3913921 *man/entropy_index.Rd
5640a608e09c3013abf9104dc71609c4 *man/extract_gene_peak_annotations.Rd
f4699329b6807b81e82cf9de0e0dbf49 *man/figures/README-SPICEY_combined_plot.png
e7f6a0ff1bab06fb72091c7edda185ea *man/figures/SPICEY_LOGO.svg
b954003c7f04550807b1e9fceb88f7af *man/figures/SPICEY_LOGO_LIGHT.svg
abf3945b70eca54a37a7daaf2f54e722 *man/get_promoters.Rd
261714f033c69fbcc8cfc16919fff2b6 *man/link_spicey.Rd
67c8781af9c771f3b4fee1eb5c3b341f *man/plot_heatmap.Rd
6ce4f1c74c30b890030e31c2d5278023 *man/prepare_heatmap_data.Rd
50a73de4cff52fe794d373ee4279992e *man/rna.Rd
7157ad5b59f5ba7b43f0dcfc134d5276 *man/specificity_index.Rd
69dffe5983655f9878ff8cea0263d72e *man/spicey_heatmap.Rd
d6347665f6664e636c261a115906087b *tests/testthat.R
0fbc03d25c0aab1050ad050e4a905da4 *tests/testthat/test-SPICEY.R
082533b62d3802392b018e43b90c747d *tests/testthat/test-annotate_with_coaccessibility.R
75c50e1cc2eef7fc8cf11f9cddd97091 *tests/testthat/test-annotate_with_nearest.R
af911f28624bb953599553e606c1bfa1 *tests/testthat/test-spicey_heatmap.R
bfb6b885c9ddd83e63f1d233ade777e8 *vignettes/SPICEY.Rmd
