5ae3ffc8dba4e63e72940792b1ed3c5c *DESCRIPTION
141fee1907bc07c26bc22fbb28c5d442 *NAMESPACE
d10835bf558ae421b3f8d61660d28d1d *NEWS
e34c762447a6a17949fad7d6e0acc571 *R/DataClasses.R
a3c3575fabd6cec6042c05ed45fad33d *R/SNPhood.R
95144ebba0c5c5023421aff43195e8cc *R/core.R
822db3296824026092a0dae27a593c71 *R/misc.R
9d1c280a809a8e6dae31edf965a4125c *R/visualize.R
146545eed51cff2d152003a59c061b9e *R/zzz.R
2037609b8207bfdb1a3a85815790281e *build/vignette.rds
d519de710e8d1180f3b4ee42bde7fb6e *data/SNPhood.o.rda
e1fd49eaa63096124d060b9f19e66965 *inst/doc/IntroductionToSNPhood.R
0f7dff87ed06232fd9e39e5bd50f59b6 *inst/doc/IntroductionToSNPhood.Rmd
7aa7ae5b84b6ee097411e9b59f1e7c8c *inst/doc/IntroductionToSNPhood.html
a8ae77e30947c69f48b1975637bd2c9a *inst/doc/workflow.R
ed959ded83255ac9a6b5f3be1915797e *inst/doc/workflow.Rmd
02c1b1dd36ec117501c50ee08244b118 *inst/doc/workflow.html
8819cb5a0dfa7bcd4ef922ff8d6ab8e5 *man-roxygen/SNPhood.R
4ae9520b2c200223a33acb76ed39a0d0 *man-roxygen/colorPalette.R
9121719b7d7124d782be5d9686d7e618 *man-roxygen/dataset.R
12acee3d44e5c2cfd49e4c51b2de9ada *man-roxygen/datasets.R
56f1f6298658de7d92790f1243782afa *man-roxygen/fileToPlot.R
cd1c647486f9117c6c63c1f436f907f9 *man-roxygen/ggplotReturn.R
afab01ed7a3163e19de4b7562d9cdc5d *man-roxygen/maxWidthLabels.R
27f7ed9bd663e23ed03b435ccdab9003 *man-roxygen/nClusters.R
e1b174e26fddad44a160c405a38d1b11 *man-roxygen/normalize.R
9b914ded5607a02cfdecf6f1adb31ddb *man-roxygen/object.R
ddbfe51f1293653b118ae62a5f12ea88 *man-roxygen/plotChr.R
e1d130444e7f3d17aa5020d63c686650 *man-roxygen/plotEndPos.R
d7b4f065df0fe0b1f7d16a1be33a47e7 *man-roxygen/plotGraph.R
146e99e81b4aab0f0dd21906c22ef8b7 *man-roxygen/plotRegionBoundaries.R
5592e52edf01f23e500496b39100ac3e *man-roxygen/plotRegionLabels.R
a4fc741d02953565d4587e1dd7a32c4f *man-roxygen/plotStartPos.R
00aa859516287b446f8edbf29d4bed8d *man-roxygen/printPlot.R
0e108e30268921f26e2b404fce4885ff *man-roxygen/readGroup.R
e098888ad6079227eef9b47f0bb8802f *man-roxygen/readGroupColors.R
07efa5f50e486acce03d5cb885343ec1 *man-roxygen/readGroups.R
3fc919f08a6c5276aedb0d63cf82ece0 *man-roxygen/region.R
eeeae50a2f9b3c640e6ab04407e9bdce *man-roxygen/regions.R
31919594dd77a443346e7c830fae65a5 *man-roxygen/returnOnlyPlotNotObject.R
b5edeade92102597400bafd6a5634410 *man-roxygen/signThreshold.R
ebfff8ed04654b85d7df915e8497125e *man-roxygen/sizePoints.R
35b6f56202cc4f6ce2922c73e1f804a2 *man-roxygen/verbose_FALSE.R
9ae8f55494fca514fdd60cf80fb287f1 *man-roxygen/verbose_TRUE.R
2ef7856dc07ae5caadb0b9d0d5c3b218 *man-roxygen/ylim.R
5ddb71a64bc8dec8ecc5a99bdf4a1b82 *man/SNPhood-class.Rd
a101a21504f11a56dbe705269b124cdc *man/SNPhood.Rd
b3f63bd2e020c6fd1fd33c3451d73f67 *man/SNPhood.o.Rd
0b685675b2cf8844fe8a109c4b13933c *man/analyzeSNPhood.Rd
55d5d4b46745f9f8dd6a10b26e6e6812 *man/annotation-methods.Rd
52fbdec84ea58c7368c21fba076530f7 *man/annotationBins.Rd
3f25fcb1d7a243f046c748b72cdb833d *man/annotationBins2.Rd
a1da0b79fa79984891245867d037f22b *man/annotationDatasets.Rd
1185406c461512a2896561c88f280e76 *man/annotationReadGroups.Rd
ed24f3a17e3c921cb201f56c570f944c *man/annotationRegions.Rd
8225faea8f9cc2a114358edd6a0884fe *man/associateGenotypes.Rd
7faff4a21eaa48b8f1f8565edc3dec4b *man/bins-methods.Rd
67ff106bb081fe0fc225ba409e78ffc4 *man/changeObjectIntegrityChecking.Rd
85e365683bc41f2db01efabd2fd14f56 *man/collectFiles.Rd
e3881f9118ae83cf3922f0c28b98c309 *man/convertToAllelicFractions.Rd
520867f54520354b33e09c060a6b6a07 *man/counts-method.Rd
a49fc583019f6b7f3c86c93941f396fd *man/datasets-methods.Rd
de5c847c46024f6749353df57c62c449 *man/deleteDatasets.Rd
2d0cf1e4a6af23da9d5950afef1e8be1 *man/deleteReadGroups.Rd
27edef3cfc064cda2aa9243075d85f7b *man/deleteRegions.Rd
2187688de4cc80f4bd477d75f1ca0af4 *man/enrichment-methods.Rd
9f06d894f4c7ed01f966a035140ff5ca *man/getDefaultParameterList.Rd
d9997a577a3ec410f5833dd9fc06a585 *man/mergeReadGroups.Rd
0f5fdf70c44e2b6a9d251e0951c1dd72 *man/parameters-methods.Rd
7728189fe70ff0aeb4a36de04657258f *man/plotAllelicBiasResults.Rd
c73ef984845290a6e4f20ddd8ead942a *man/plotAllelicBiasResultsOverview.Rd
c7ed2527fb566ddd41f7549a23aadbe7 *man/plotAndCalculateCorrelationDatasets.Rd
8eadbd6c2577050320ca3b415ab17b0a *man/plotAndCalculateWeakAndStrongGenotype.Rd
ae2ca3efbbf63cf28d03318c0058f00e *man/plotAndClusterMatrix.Rd
c81f64ed6fd4eed7d80d337765fe3805 *man/plotAndSummarizeAllelicBiasTest.Rd
534617543839ae389ed65acd1d8bd8a2 *man/plotBinCounts.Rd
5eee24af4058ce7c32db69071bea06e1 *man/plotClusterAverage.Rd
f755483f6171995fc0e98ff6d9ec7a75 *man/plotFDRResults.Rd
9ca30704895f9667163480716e0996a9 *man/plotGenotypesPerCluster.Rd
ef7095466ffc9acad61cabe7740c726b *man/plotGenotypesPerSNP.Rd
4f9f13c8ec1eb609548cf17feed79b33 *man/plotRegionCounts.Rd
ea35322adcd441fc6442b294d4de6a46 *man/readGroups-methods.Rd
619d9666412c6a96f20cbd3f6f1bc479 *man/regions-methods.Rd
ea93e93bab0a01eb4cf886bf1be536a1 *man/renameBins.Rd
267a7180ed91b5922cfc7311901db380 *man/renameDatasets.Rd
4a23bd2db39a083889e8b204caf2f683 *man/renameReadGroups.Rd
a084039ecc1f8dc3695febec1c82addf *man/renameRegions.Rd
75328416dd0549552fae02540fe4471d *man/results.Rd
05f7c2934cd3d77c2faa3a93369ce302 *man/testForAllelicBiases.Rd
0f7dff87ed06232fd9e39e5bd50f59b6 *vignettes/IntroductionToSNPhood.Rmd
66fd0739b56eec5b3dff0179a3fa2eb0 *vignettes/figs/Comparison.png
a927c1954f4c2d89097288871f0b619d *vignettes/figs/Input.png
6c79ed99b5c85b7b6d651781c78284ca *vignettes/figs/Logo.png
77fe27a31dc96c781c5d6bb228f10b41 *vignettes/figs/SNPhood_workflow_detailed.png
123e37115cedf3807afdcdd27750944c *vignettes/figs/SNPhood_workflow_simple.png
8a9947019a1a2f67c0c985e7fd114e1a *vignettes/figs/genotype.png
0eebf0bfc62511e9e3a4161b0f1289ba *vignettes/figs/inputFileFlexibility.png
7e475e51fffc817564f63e23fdafdcc1 *vignettes/figs/inputNormalizationScheme.png
ef8f2e1143c42a51c32346beb1b55eca *vignettes/figs/normDetails.png
3463eeb6fd6903d10792a68df094158e *vignettes/figs/readFiltering.png
ed959ded83255ac9a6b5f3be1915797e *vignettes/workflow.Rmd
