3632a20d1e13a5e68943d7a7eecd0622 *DESCRIPTION
e00cf56ba4da888a021e5720565e707d *NAMESPACE
0c2e90b6711d90345efb962c05ecf1fb *NEWS
7c9ef8df360575e079f26bb564549a34 *R/AllUtilities.R
5c632d3cf0d7629dd0cbf928d702534f *R/Conversion.R
ff60f91b0e57d723ca87dd58bfbbc31b *R/Conversion2.R
34a551808732633f4e77bfd48885f811 *R/IBD.R
14b648a1745db1c9d949f822c8f722d4 *R/IBS.R
6d6837c93a89eecb51937bc6e2bb7ccc *R/Internal.R
e56ebebc8462208710fdb593eac00d1e *R/LD.R
5ceec2e9935603c3767ef33c708a6417 *R/PCA.R
c639bd416496a1bf79f1a8b44fab5927 *README.md
81b4ce7ea0da459f1deb4740f096b92c *build/vignette.rds
466e8841fe82b8364c8ce0fd398a592d *data/hapmap_geno.RData
fad941294ce54fed0deb745d0ceac9e2 *inst/CITATION
e6bd15cd07b23677a08097c49b134bda *inst/doc/SNPRelate.R
95eb8fac851362032244cc37e2364b9e *inst/doc/SNPRelate.Rmd
279722e9e9a0331eafa6930953ab8174 *inst/doc/SNPRelate.html
c52450b300514b68083eb17fc48e0133 *inst/extdata/hapmap_geno.gds
8ce36ba62db03058334539e39cd90062 *inst/extdata/plinkhapmap.bed.gz
9a2ed638cec5606a7dd688a2be73eb6d *inst/extdata/plinkhapmap.bim.gz
10e89c20b50afe95ca4db3a380a639bb *inst/extdata/plinkhapmap.fam.gz
00213792673cddfaf7ac9606dc226f14 *inst/extdata/sequence.vcf
98d8d0131e6c6e3cec57796c9278c54f *inst/unitTests/test_Func.R
6258fef204e6eb50ee8ff4eb632117c9 *inst/unitTests/test_GRM.R
45e1fa9ad4d9f13e6a7a87c0661c547f *inst/unitTests/test_LD.R
6cea730b855c1525489edaf88e9e8edc *inst/unitTests/test_Transpose.R
70e740cabf68e0ec34bf00627a8dd633 *inst/unitTests/test_examples.R
fb1f64466e47b08bcda904bdaf0c195a *inst/unitTests/test_rel.R
75c43d75fb5c33c70423f3d18106acd0 *inst/unitTests/valid/Validate.Beta.RData
31525a5478a843a237584c8b2cfc736c *inst/unitTests/valid/Validate.EIGMIX.RData
f1babf6c074846ede1b5ab22c24e203d *inst/unitTests/valid/Validate.IBS.RData
52e25eee9d95131186df1702a45d4e9b *inst/unitTests/valid/Validate.KING.RData
9709348379be791499af197d714520cc *inst/unitTests/valid/Validate.MoM.RData
ba3c12e4c6d2a019bed13679cfb69be7 *inst/unitTests/valid/Validate.PCA.RData
5236a6ef0d77624083206d5bbf536950 *man/SNPGDSFileClass-class.Rd
c0fad968ee9c438d068948936ed8d29f *man/SNPRelate-package.Rd
bcde23ce525cf5957d258e3a7ed2fd8c *man/hapmap_geno.Rd
a953c929ef4bfa77778e71afeaac1d70 *man/snpgdsAdmixPlot.Rd
444fd25ffd1b2bd521cfe841b04e9d57 *man/snpgdsAdmixProp.Rd
0c77a780b43951f1b1bd1e561368ec1f *man/snpgdsAlleleSwitch.Rd
f79bb0fe66e01d4e44c5dea594751beb *man/snpgdsApartSelection.Rd
93c7eb155c4e0fb244839bb678d505ae *man/snpgdsBED2GDS.Rd
bc0b585844a64d291afc3c240f8fada7 *man/snpgdsClose.Rd
04fe368a7b6422aa480751234c7190c7 *man/snpgdsCombineGeno.Rd
13b61ac337c6674005ed09d0d03b1171 *man/snpgdsCreateGeno.Rd
f58fe93883f2f12584352c7b3c3d8d0e *man/snpgdsCreateGenoSet.Rd
c23cbe77bdd8f680ac360b8c107b348f *man/snpgdsCutTree.Rd
de8c0ab31de23562bd133efbc875b74a *man/snpgdsDiss.Rd
320b91d3d3d7dd6cb4ccb51e1b2b6174 *man/snpgdsDrawTree.Rd
322607f9fa158b51e7db2a30da8bac96 *man/snpgdsEIGMIX.Rd
4c4d1816e22c870938c150f60b1292cf *man/snpgdsErrMsg.Rd
1d96017fdfbd487e4720cb7d427b09fa *man/snpgdsExampleFileName.Rd
279e8b3f0494d2ae0f94a3ae900d5887 *man/snpgdsFst.Rd
02233f2f6fddeb63a874bb7b185fb8e6 *man/snpgdsGDS2BED.Rd
a06128f31d165758adb987725f16397f *man/snpgdsGDS2Eigen.Rd
2fd57f64bf8b044f939bb140b85b255a *man/snpgdsGDS2PED.Rd
9706bffb39c44fb0499ba50bbe851256 *man/snpgdsGEN2GDS.Rd
061c4d3b808827e9c60b6a7f7a28c0e7 *man/snpgdsGRM.Rd
e70099093ec7e11cda653eac56b4bd2f *man/snpgdsGetGeno.Rd
b8c6cbd0d68e7c0391060a0a83fa9539 *man/snpgdsHCluster.Rd
114decdca84354b12b34d8479d4cc6cb *man/snpgdsHWE.Rd
ed9bd42fb53ed0d2625f7da7f28a4649 *man/snpgdsIBDKING.Rd
0f8d59d68b6c39517b9093a115732a08 *man/snpgdsIBDMLE.Rd
ec202a7af78b6291daa7423f97c175da *man/snpgdsIBDMLELogLik.Rd
513372fab70b4d20d92b1670c1c53ef7 *man/snpgdsIBDMoM.Rd
c1d62828af52cab436571b2ff57d7b4b *man/snpgdsIBDSelection.Rd
0df19154a5e34862c085817447dd4272 *man/snpgdsIBS.Rd
f50cfe7467720940739e278fa837da18 *man/snpgdsIBSNum.Rd
9ff1e19e627d26dd06b12c7fe3937c98 *man/snpgdsIndInb.Rd
60ec120c7d309820f16cf436733773eb *man/snpgdsIndInbCoef.Rd
6a5eecd5d762765cb106e3de62900514 *man/snpgdsIndivBeta.Rd
8b7d9129b6463bd3b02b5f2f2c31d6a3 *man/snpgdsLDMat.Rd
38622b1861327f69f115ccd03fd94cc0 *man/snpgdsLDpair.Rd
9780a23ec4278ebbcde2d5b73ee65253 *man/snpgdsLDpruning.Rd
ae2651049a9d7de96ef9011e3e68fc17 *man/snpgdsMergeGRM.Rd
9d6d67ffcc2fd196df51f9954b6d0ada *man/snpgdsOpen.Rd
52f37b1894158ccefe51369473ca419e *man/snpgdsOption.Rd
f93da76fb0b4ceb05bea978c8700f1aa *man/snpgdsPCA.Rd
5604fdc917e9f2bfefbdb857aec5994c *man/snpgdsPCACorr.Rd
cdff9ccc7ee47d82ce3b5c35fbef866f *man/snpgdsPCASNPLoading.Rd
c5f6a92068a03e4d2a738dd78b4cdcf3 *man/snpgdsPCASampLoading.Rd
03d86d9da4a7383f0f0c840dd8607f4f *man/snpgdsPED2GDS.Rd
9d22815581236f10e4e88b386b3b85cc *man/snpgdsPairIBD.Rd
71aa6b3b57f44fd442a5c62c04b4aeae *man/snpgdsPairIBDMLELogLik.Rd
44f274a18c6dafeed2396190e3bcff31 *man/snpgdsPairScore.Rd
f9cce633da1811833b14491dbc2d4a9f *man/snpgdsSNPList.Rd
d2506eedd3a3aba21ce95f79b58e0938 *man/snpgdsSNPListClass.Rd
abf29864d298b53d5193922f31b71f70 *man/snpgdsSNPListIntersect.Rd
977cce1396d5afa9f4837441824a3f4b *man/snpgdsSNPRateFreq.Rd
0762359abd70652f3bf9f3b33d60d905 *man/snpgdsSampMissRate.Rd
324389333422df5d9094bfba073073dd *man/snpgdsSelectSNP.Rd
350fd2bb09edbf99a057882a22f7d73d *man/snpgdsSlidingWindow.Rd
295630dccd2f15031fdba9faada323d3 *man/snpgdsSummary.Rd
ebf8acb46fabb48bcd7f8754ad492f76 *man/snpgdsTranspose.Rd
2aa7a0222ce22e91c6ef02312507b5fd *man/snpgdsVCF2GDS.Rd
f05a98bdb629e4fa894c9db054f4b13a *man/snpgdsVCF2GDS_R.Rd
85df64d252ae697ad3e9e675da28cfbf *src/ConvToGDS.cpp
f64117d55d9f3a008eaa6c7faa79758f *src/Makevars
f119134790b527895cc3fd62e8958f7c *src/Makevars.win
89bfd46a6f481c620f2521ae7a6a09cf *src/R_SNPRelate.c
69415adf34c5aa10a835fddc19b96224 *src/SNPRelate.cpp
c39a151861e30f1a515388748c84a35f *src/ThreadPool.cpp
65ba5613aa400a929067615a8726e6bf *src/ThreadPool.h
92d84c25ac720c43d421ca2767c3e7cb *src/dGenGWAS.cpp
2e33bb06e2cf933aef2195ca0bb47fa3 *src/dGenGWAS.h
22d891060282c4d84508b0d2d390b919 *src/dVect.cpp
76828896f31e1ad7aff6f96492ce5432 *src/dVect.h
f029298d996215e9a18b95824ee78882 *src/genBeta.cpp
3fd6735b89191e7c36114ba0bc4979cf *src/genEIGMIX.cpp
3ce8461285b949241e1202edbbe56911 *src/genFst.cpp
0bd84da03cb781628a0b6aeb5fcbc262 *src/genHWE.cpp
91d08df18c42171eb0d08099437875e2 *src/genIBD.cpp
158f30af71f5f48eccb7284ea72d4a53 *src/genIBS.cpp
2fe80e137c27b06c6508c8ba0978e007 *src/genKING.cpp
3c2732213fdff7bce74a8be05866b40f *src/genLD.cpp
5b5e2b1873835b0afb279a2a86c254eb *src/genPCA.cpp
58e8c12d86cd2122951eb8e0ba8e7f85 *src/genPCA.h
de54a36bef336b813009f710938b7fc5 *src/genSlideWin.cpp
27b129f2ebdd14def86224da0a634f1d *tests/runTests.R
95eb8fac851362032244cc37e2364b9e *vignettes/SNPRelate.Rmd
1ee9b84f47bc063ecd95df125ff754b2 *vignettes/flowchart.svg
