1a9ea9ecb4ab1715fd586a1d44319f7c *DESCRIPTION
a31592ed0cdeb4524cbb39de15749b2d *NAMESPACE
47ccd6d28d905c7f80d2d6ee6637707c *NEWS
f0a80d6205e63410ff0bcc036aab3f57 *R/RcppExports.R
0628930a2b9560eec1aa9adacf15b073 *R/Rqc-package.R
3d4093993429ecd546a02cd44a848502 *R/RqcResultSet.R
efc73503e9279304d3b3564c60d9bf98 *R/checkpoint.R
486d7e34c4110354bcedfe37006620c3 *R/detectFileFormat.R
2660d5c1b2292cc5ccf9e992cd27a696 *R/rqc.R
979725a399e652d83f43d49fb30c01c0 *R/rqcCycleAverageQualityCalc.R
547eacc59066306fde4bb14d00fe5478 *R/rqcCycleAverageQualityPcaCalc.R
222e57aaec6e4f9c2d7ce7f1ba667e0e *R/rqcCycleAverageQualityPcaPlot.R
8d4b2d0078dea6a42705faf13860d923 *R/rqcCycleAverageQualityPlot.R
b2ffb62c1d06cc329c46dd178c4ba9a9 *R/rqcCycleBaseCallsCalc.R
2065bffc1bf08f93585ba204bd370e01 *R/rqcCycleBaseCallsLinePlot.R
8a0dd332d8580f00a78b045e78ad1ffe *R/rqcCycleBaseCallsPlot.R
5e1e7eef5722347fcaf526eb5434a83f *R/rqcCycleGCCalc.R
3402e4bfaca63e34559851d263a1a1d8 *R/rqcCycleGCPlot.R
bb20d696aef6374b0e61c909b293560a *R/rqcCycleQualityBoxCalc.R
a00a1717546230ec0c1e84f0fbea7856 *R/rqcCycleQualityBoxPlot.R
f1a60fd647ab3bfe1fb37bfaf1a63cf1 *R/rqcCycleQualityCalc.R
86b7af40654543928d3913a9a967df72 *R/rqcCycleQualityPlot.R
c4dbdf67f0d85eca5ffb999c3ee7d49b *R/rqcFileHeatmap.R
2b6d27084af10645a9427f1cbc87fbc4 *R/rqcGroupCycleAverageQualityCalc.R
46424ab6846b1cc1f9c5cc8de7880334 *R/rqcGroupCycleAverageQualityPlot.R
115589bcb455f2b4e9193d23c20b3c1d *R/rqcQA-methods.R
df9d67b8948d0c9905eaa6d5a8e0dbc0 *R/rqcReadFrquencyCalc.R
7d8894748e50cf70c84a81f95dbc3083 *R/rqcReadFrquencyPlot.R
e53ba10401dd0afdb655063e5f66e56a *R/rqcReadQualityBoxCalc.R
8a28d41d5fc96dc5ffa1bb33f4b1dc41 *R/rqcReadQualityBoxPlot.R
76440b6585bcd8a4ef9b47c54c2e79af *R/rqcReadQualityCalc.R
021718ed17e9b6ebee8870d1c7a7eacb *R/rqcReadQualityPlot.R
24557896ac3a164d9371b6493aa7a1d8 *R/rqcReadWidthCalc.R
66a8b7e318e137b1a74abd819c4ed50a *R/rqcReadWidthPlot.R
b17dec7db0a930386e4759515dbd8efc *R/rqcReport.R
1578a9453432bcfd540eee8526d1b450 *R/rqcShinyReport.R
51dba6746c826efa5a27615dbbe4900e *R/stats4trim.R
3933596d59c9b8c7b078f34dd977c0ea *R/subsetByGroup.R
88a86fcd24c283dfa9de49432c184112 *R/subsetByPair.R
e6dd72e55484cd64ee0dd40e0b415161 *R/utils.R
9fe2722fce2008b9f5ea17592072fba3 *README.md
d85e3b892d88d395a69ea554b7edf2b7 *build/vignette.rds
db09b26711965fbfff2420fe013a9acf *inst/CITATION
75fe3afdc83de96e07046b889cdf1872 *inst/doc/Rqc.R
913a491100139115048db14abf8328ed *inst/doc/Rqc.Rmd
045d55c64034ba4003dc9843db24764c *inst/doc/Rqc.html
51ff7b4e1d96ffc7b95d9b09d9192746 *inst/extdata/Rqc.rda
51e0f50e53d4256a40de56bc9d91c29c *inst/templates/rqc_report.Rmd
34bd32361274df2154ce3f81c6d2614a *inst/templates/rqc_report_noX11.Rmd
0ba932390f74cbc35e39f946d242d02e *man/Rqc-package.Rd
7c5603c82fb6d6dd6e5abdae65d82695 *man/RqcResultSet-class.Rd
e3518e0de9b22b5d8dc5eb6cc43da33e *man/checkpoint.Rd
48828db7e240e8650588bdbcbcec1ca8 *man/detectFileFormat.Rd
71c39ac66f0e11b9f01eef45ab056cda *man/fromRRDNA.Rd
da237d7d73731ca6f651da3298d0d4e8 *man/matdist.Rd
eeb4197c9aec616537c1910a1bc3b6fa *man/rqc.Rd
9d7bb3f61c02f446e5e37233eb3211f1 *man/rqcCycleAverageQualityPcaPlot.Rd
664b5d61ff3b75f14090479e25c61874 *man/rqcCycleAverageQualityPlot.Rd
19c4104ad18663738a1bedafe3a9a5ff *man/rqcCycleBaseCallsPlot.Rd
e08c488a0117da86a6b42319dc3b83b2 *man/rqcCycleGCPlot.Rd
8700f1192f9a3010fd68b4e3c22ba0bf *man/rqcCycleQualityBoxPlot.Rd
9b5099eafb071c6feba2f966f2498b82 *man/rqcCycleQualityPlot.Rd
341ca95b7c389317550d45b39da13e7a *man/rqcFileHeatmap.Rd
00239b15f4a24c02697d0364470d6a3e *man/rqcGroupCycleAverageQualityPlot.Rd
37c484310292124a3d4653fca471cd55 *man/rqcQA.Rd
282445fe99b6a779e3dffa6b7080a7dd *man/rqcReadFrequencyPlot.Rd
0dba6322e433f14746c8d1e70408d014 *man/rqcReadQualityBoxPlot.Rd
0b5c17956af51be3b587c04db2d3c5c8 *man/rqcReadQualityPlot.Rd
668fd6325230344ed447e35657f9cc48 *man/rqcReadWidthPlot.Rd
cfbe2b706a3a9a4d40da25cdb894f7f7 *man/rqcReport.Rd
000a77a35c27534ca947944c4ed979bc *man/rqcShinyReport.Rd
4ceb91b3c244530b90ce8597187ce519 *man/stats4trim.Rd
9f669673c4507e6c7863b3a20b9a5038 *man/subsetByGroup.Rd
a06b94ead78d4bd64d258b02b453ca69 *man/subsetByPair.Rd
671cc8c42815806e548aeec6a3e60d4d *man/toRRDNA.Rd
94f727465b1afe9dba1d87588b6c5ab8 *src/RRDNA.cpp
942142b223ffa387c9d84e6eee522d1a *src/RcppExports.cpp
e9389a13515859e874a1db625ab286f4 *tests/testthat.R
3602769bcfd8798e5a5517f4f54cf82e *tests/testthat/test-rqcQA.R
c1b86bb1d06454b919412604e35989d7 *tests/testthat/test_merge.R
f7a5dcf39f133af9d2cef3b89cccd8e4 *tests/testthat/test_rrdna.R
913a491100139115048db14abf8328ed *vignettes/Rqc.Rmd
