3bfeab19d957eaf39d71ad59b87511f9 *DESCRIPTION
b4cd95b6c16c62ddd8f904b0a76a01b5 *LICENSE
7cb527715a6d907d393455349947e714 *NAMESPACE
4b9f356f98f4f68334cb8e6fb86ba75f *R/AllClasses.R
87fc6ecabe1796bcf53ef1acf7ce5b1a *R/AllGenerics.R
15c7a004c94c46583ed255a836f14328 *R/RPA-package.R
14b2c18d92ef98fe954a522f06a092b8 *R/RPA.dcost.R
878c17dbe5f9d5ec8be82950bca1aca5 *R/RPA.iteration.R
a2e634c67d3bd1cf21f112e064c347d4 *R/RPA.preprocess.R
2d401c019fc1e9a340e4ca30e7a1accb *R/RPA.tau2.update.R
c931f516543d0e613357c3add860b1c2 *R/calculate.rpa.hitchip.R
47270627868c202bbfcdb6dc5cc71d64 *R/d.update.fast.R
6dd6e1d4baae3730cba2ba7645841743 *R/estimate.affinities.R
243ac4da952dca39217b3ea01ba5c58f *R/estimate.hyperparameters.R
3330fd3793905c83433d02db5c2de64f *R/firstlib.R
ad0256b797ab9248b1044a47177423cc *R/frpa.R
13b36b6f69a77d1f83be45de47664f55 *R/get.probe.matrix.R
1512aaf6fa54cc647a7e63d9fa4a7f93 *R/get.probeset.hitchip.R
b87cedd85935e0cf21395f1ea8985947 *R/initialize.priors.R
d4a6f2d87050934e13bfaffe5cac49fd *R/internals.R
8cd65bc60be80c03402d86c435755840 *R/levelmap.R
63c620631ab4e49393121c1a96457137 *R/n.phylotypes.per.oligo.R
8a3bf0d06331292ef3e3eaedd46d0e75 *R/online.quantile.R
f8010c01e3ec39d43105dc4efdcfb364 *R/plot-methods.R
57c138ec7280763c4b5fabc7851e99da *R/probe.performance.R
326daa087c0412e451675a59ee9f4efb *R/retrieve.probesets.hitchip.R
75072de7f46cf9485be49370e6eda877 *R/rpa.R
ff6092010791da20777d4881132b271a *R/rpa.complete.R
5829fe20a3f88be344ef79ab6890a176 *R/rpa.fit.R
60e88225950d6a3d26c52466f76d8217 *R/rpa.online.R
3eae042d3f85281737a3e439cc87590c *R/rpa.plot.R
8ff7e0e5f6a61f917a88e27da1aac97d *R/rpa.summarize.R
1c0bd315863c9fad18427aefbf02265e *R/show-methods.R
1f134b441974a86f22d2023205c03e85 *R/summarize.batch.R
c3093540ef24f96ff02a46c6e02439e7 *R/summarize.batches.R
df96fcdcf253e5ffa4ee86370bf9ee4a *R/summarize.rpa.hitchip.R
01eb477fa26c174da909d1e38df4d4f0 *R/summarize.sum.hitchip.R
9e02c9a316ead6276c88ed10f83f079b *R/summarize_probedata_hitchip.R
4abb79e2119091110038186989c607ac *R/toydata.R
3371127b7e3af06a584cc0d4c4efdf30 *R/update.hyperparameters.R
6d37eb8f3c7f42008f5d9ad8580b2338 *R/updating.hyperparameters.R
72c4a2caa8f0a085946e956b4b08474e *README.md
3e9f284d1bf77c4f8c9ab745f9fad221 *build/vignette.rds
8b9ee870bb6eb2dce6bf6ef4e3e81fcb *inst/CITATION
93254c8d21342aa0eb726dfefc8161ca *inst/NEWS
b4237da78980901bb4a2ac220b29bd3d *inst/doc/RPA.Rmd
0280f686990ed3f24c8df7e12db0ab93 *inst/doc/RPA.html
b8b76cdd7805ad2637621d1a95f3ff96 *man/RPA-package.Rd
13e6b584235552a6f76d22e24363bbc8 *man/RPA.iteration.Rd
41a2e34a4501b92d2e31e14f5f0fc1a7 *man/RPA.preprocess.Rd
3b7bca916ed0cbe965b2d808a62de740 *man/calculate.rpa.Rd
3afdf7fa934ef78c97a382e9a9910409 *man/collect.hyperparameters.Rd
e756733c15c7659db250893222bf527b *man/d.update.fast.Rd
b53678f9593324dc434eb205d84e2519 *man/estimate.affinities.Rd
1ae64606e178262dda84045008c32af6 *man/estimate.hyperparameters.Rd
1e6fda2be5a2ee2fdabb77d8686ade21 *man/frpa.Rd
c87b5f45874f23b4e2e2b97b3b57759f *man/get.batches.Rd
b78a85e730200302b4e296bd5d79a8e3 *man/get.probe.matrix.Rd
205d70099425f80215f948df008470eb *man/get.probe.parameters.Rd
2b96f2789dad0f19cab4de190d4e51f9 *man/get.probeset.Rd
941ef61a2dc4f1ed6263d073dd4314d1 *man/hyperparameter.update.Rd
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af6334220ec3002f25f7c3cb989d7522 *man/n.phylotypes.per.oligo.Rd
61236fa4a5804c4dc336ae3c90e38bd7 *man/online.quantile.Rd
4e5b40e85bb7009ba7d75a82949fda69 *man/probe.parameters.tolist.Rd
64cae062a19fcfc320facdc4796d73d3 *man/probe.performance.Rd
b0a73a90f4fb10320eeb01ff66cd87e0 *man/probeplot.Rd
d3968182421fb2b4b3ac82bc1feaeb50 *man/probetable.Rd
2535d492299eb4b0b161a811c04c231f *man/retrieve.probesets.Rd
95f183acd5a78b062c7ad2a6ddfb6f64 *man/rpa.Rd
14eb1b1dda5c970fb1be935caebb5294 *man/rpa.complete.Rd
12c83951af83c465cb338517bbd2b143 *man/rpa.fit.Rd
f486c0e1ee36fe63d969fbcc57373e3c *man/rpa.online.Rd
41782557042cff1b47a80e26e91be83d *man/rpa.plot.Rd
6c786a2512bf959853eb6e13412e8393 *man/rpa.summarize.Rd
470606cf838686334736fc6bbe9ed15b *man/rpaplot.Rd
5fb0edef3d0e3fa974e6c4e43f7f9cb4 *man/sample.probeset.Rd
deb88e447f53f3cb3e5851402b9d4973 *man/summarize.batch.Rd
f541491ee19bcaeea5b8807ae6d3a486 *man/summarize.batches.Rd
e483dfc8486e6c789018376368db0f0b *man/summarize.rpa.Rd
dace8c53ba8dafb679eff7103dec1757 *man/summarize.sum.Rd
8b716cfdcbd6970d73764e655ad23ca9 *man/summarize_probedata.Rd
b81de927fbfc63d852af7e54884a380f *man/updating.hyperparameters.Rd
3602669f8c0d6778dd6b9c43d87bdf8b *tests/rpa.R
b4237da78980901bb4a2ac220b29bd3d *vignettes/RPA.Rmd
701e95affbe13f3c68b55c6562d74945 *vignettes/RPA.md
