5891ce7af03c81dc73d45da74b3356f1 *DESCRIPTION
2d9bca61be0f296821cf80724a28737a *NAMESPACE
be46ee41e0f6b48a2634752d87e5b00f *R/AllClasses.r
a48a0cbaf8366f792c1c2fa3db5920a7 *R/AllGenerics.r
ac4a63d495ea0fbfdf9e19b8aed866a3 *R/ChiapetExperimentData-methods.r
9936e860f38363af0419e76d546ef1c6 *R/ChromMaintainers-methods.r
0d837408eb100792623babd2f6257b7c *R/DAVIDQuery.r
24f7f9ba8db711d611760cd350038c7b *R/HLDAResult-methods.R
607bd677515316530a5ed5999aa6fee1 *R/NetworkCollection-methods.r
8f61041fbe3577df2a1ef786128591fe *R/PrepareData.r
70cd191c719e646cef4fa95ebb95ff6b *R/RcppExports.R
972d5d577c4c62ef43724bb92e973149 *R/WebGenerator-methods.r
7ab8e919b243e25ddf9812fbfa676eb6 *R/helper-DavidGOEnrich.R
d7b23dbf11dc396e4b4a462f7542fb6f *R/helper-GeneNameConversion.R
a361d5adb5c900871996f3a7875b29fb *R/helpers-utils.R
85134a061f2f12233b1fb1938356aa35 *README.md
a5c707613034029bae511c707e53ba4f *build/vignette.rds
c45d760c23d6b5183c5de857710b8994 *data/Biogrid.RData
f35026b14c326177c028eefdbe23ebee *data/HPRD.RData
b92dce55ce53f55c1a6da9d8a9e938dc *data/RPKMS.RData
09fd09f15670c8d713d7072e618bdff0 *data/chromosoms.RData
e56758a9803ecae91ba6a8627bff9e58 *data/datalist
4e561a760cbba7cada882ab7fba497f7 *data/geneLocations.RData
8be9da8904f33ad0b33aa0c36d48d296 *inst/CITATION
fd12a368d88a6c0b238c80bfce0deb7a *inst/NEWS
9a6101e165734e0ef467736097675096 *inst/doc/R3CPET.R
8191d7562c1fd15a5cb27235d2cf054e *inst/doc/R3CPET.Rnw
9026b08a7c992d04b327e748609c85a1 *inst/doc/R3CPET.pdf
6531b13f33921c74b9b58f7bca8cf7d5 *inst/example/HepG2_TF.txt.gz
206cc5f59d538df4032e3feb4b80d4d1 *inst/example/HepG2_centered.bed
27aad1807238d539f9038cf4b37376f8 *inst/example/HepG2_interactions.txt
5fcb9dc200c6ef9d6ec62edc7e2be816 *inst/example/hlda.RData
bbb906f9eefef006ba727e06ed6784ff *inst/example/nets.RData
a7816a5973d4234a96b6e7eb987b4173 *inst/www/d3.min.js
13f63c9fb710f813ba096b43d131debe *inst/www/graph.js
7c26c349ee1933ee9ac91e7a32190516 *inst/www/server.R
7caec109ad736a5c409d2e0d80ad53ab *inst/www/ui.R
8a3e8c7e43a1778d8e09ae3a02e85d07 *man/Biogrid.Rd
c5dc8c382a82e13b19ab4656d6396fcd *man/ChiapetExperimentData-class.Rd
1ece6fdc6cb7b8696f9aa75353890f18 *man/ChromMaintainers-class.Rd
c6955641b89b6ea1edeaa27a872da58c *man/CreateCenteredBED-methods.Rd
a627f5a942a2451595e72edd4cc19249 *man/EnsemblToHGNC.Rd
035001bf27d53c8177aa44623108293f *man/EntrezToHGNC.Rd
38374c64e4d681df6f046f09659929cd *man/GOEnrich-methods.Rd
eff7bdda581e96fc613e45662cd7e3eb *man/GenerateNetworks-methods.Rd
f04779c6e34474009d3af496eab0ef29 *man/HLDAResult-class.Rd
db7f0d4a6f5a1ed641f14b7ef19df033 *man/HPRD.Rd
1c49f69a8d171e0c2cc51bd58ad0f14f *man/InferNetworks-methods.Rd
6d2e617f13f99c8eee7acb964ac3de93 *man/NetworkCollection-class.Rd
18fb7b3c08b66f61b535205f82476110 *man/PrepareData-methods.Rd
e759d39a6cf607548a29b98cbf5310c3 *man/R3CPET-package.Rd
03afe4095a9f35754deb71ac1b383ee2 *man/RPKMS.Rd
687e5de39e55ed6c7efba370667281b7 *man/annotateExpression-methods.Rd
17cdef541bae01d18dc0eb30853ed7d0 *man/buildNetworks-methods.Rd
afdfb7050834426727dc30d022587723 *man/chromosoms.Rd
f9c2dbbef73e2bd627d1ab700e642506 *man/cluesOrSota-class.Rd
31bc7527be168585ba2fa9697dd4b684 *man/clusterInteractions-methods.Rd
58cc26057cb670d5d12977f9a1890b36 *man/createIndexes-methods.Rd
aa3c00031371d7b3539dcbb07b26e91e *man/createServer-methods.Rd
7c934b116cf95d5696ebabdd0b3b5821 *man/geneLocations.Rd
81b12f40d71ba5682e8c40855bffbe5b *man/getRegionsInNetwork-methods.Rd
933acc267406e24b73e6b0e263ebd084 *man/getRegionsIncluster-methods.Rd
4216bc938b39849fd35deafd42a3d5a1 *man/loadPETs-methods.Rd
333964c082631f5da0b01edecfe219fb *man/loadPPI-methods.Rd
ad7293474068093346b731fcbcf08bad *man/loadTFBS-methods.Rd
fc1c6904eda19704273fe0bf632f6f4e *man/outputGenesPerClusterToDir-methods.Rd
447826c2c36c062becb43e359bc01f53 *man/outputGenesPerNetworkToDir-methods.Rd
72e28d499d973b8f2f4e88dc07e4e214 *man/plotRes-methods.Rd
b95378cedea387cd307b9fdab40a2adc *man/plotTrack.Rd
cf3b814a4e3965df086cfa1bfcf061bf *man/updateResults-methods.Rd
1dfdf6c47b4ed0fae6d35bc174b60291 *man/visualizeCircos-methods.Rd
b4eb897bb7a33010f800216179249d09 *man/visualizeInteractions-methods.Rd
b3f86c20b81b51f5162874977d38784d *src/Makevars
73505498722ad4b07b0ddb3067e92523 *src/Makevars.win
68b5b8937e2dc2cdc630bf420ffab3b4 *src/R3CPET_init.c
b909eb92071bfbde7fc21859881fd945 *src/RcppExports.cpp
f2e9dd6d8107d8bb65cad8206470ace1 *src/corpus.cpp
02e5886a7787fabc1e94a810a1c08058 *src/corpus.h
374797db9e21b2245c04328ae31f5a5f *src/main.cpp
1fa02101d94d920e724ea0fcdb3fd16f *src/state.cpp
27cf3b1dc85ebb02dfad784d49e4183c *src/state.h
3322d7f06cfd3cec8bd9adbfb124d46d *src/stirln.cpp
9ce5a8330435415277c2bdbaff5a56cb *src/stirln.h
78d10af8bcc16088f052e4b82e8439a1 *src/utils.cpp
490388a632e7342001f4106bfffffa49 *src/utils.h
58d1e2f3b0c1d806c3b67fad2a8584e7 *tests/tests.R
1f99a3f4a33c9d400612a14870229ba3 *vignettes/HLDA.pdf
7a71c4fca85738bbd82abdcfa9b73817 *vignettes/Network_Construction.png
7462dd599cd5880f6c58711f2ffcc954 *vignettes/NetworksEnrich.pdf
8191d7562c1fd15a5cb27235d2cf054e *vignettes/R3CPET.Rnw
15e8758e338faa49b74a9f0bacb0fa14 *vignettes/cluster_GO.png
0e411df04f25651eda7302be8bf89c45 *vignettes/rawData_selection.png
7202c4f04f318fa4aa8cc345900ba009 *vignettes/resultsClusters_selection.png
273be93cf7f26b183bb51c2b72f99721 *vignettes/resultsNetwork_selection.png
25899dfb46842e82b0998050e674cc29 *vignettes/resultsNetworks_3ds.png
