b989333ad9540812d7d7bacad115b400 *DESCRIPTION
53e5170be6c028be3fd39e9a433936fc *NAMESPACE
dce6988949a3944a97e5b4f3160bf7f5 *R/AllClasses.R
019c2adbd65823e1b8d05b4ab696d1f5 *R/AllGenerics.R
ef665ca8b5c4144e75c4c85b40642a0c *R/CleanNAAnnotationDataframe.R
8250eaf5b09e3bc3b36d6fce6d17ded4 *R/DataForPREDA2GenomicAnnotationsForPREDA.R
ca07ac97238dd717560728969f320422 *R/DataForPREDA2StatisticsForPREDA.R
8069e0b7299845bc20c71833f0dbc659 *R/DataForPREDA2dataframe.R
743decbf8c7ce0f86ff2dd8887fdaf15 *R/GE_computeStatistic.R
b79eb1f0c1791757dd0f93434cc93633 *R/GEhighWeakExpressionWorkflow.R
f82c2287617d3d9847c35506d5b18c3b *R/GEsimulationsWorkflow.R
a3271bbdb4a41e41fee0e1dc11121d25 *R/GenomicAnnotations2GenomicAnnotationsForPREDA.R
bf2b6c2b0186645575f46c6e789bc39c *R/GenomicAnnotations2dataframe.R
621e8128c4061504cc2956feb923da72 *R/GenomicAnnotations2reference_positions.R
705ddb7d1346a95a9891a0013e4e790a *R/GenomicAnnotationsExtract.R
bf2a88b007b356f3cc33bb880c219df7 *R/GenomicAnnotationsFilter_neg.R
678a2dd86ae328067a6fd50e72bbb95b *R/GenomicAnnotationsFilter_pos.R
05b09e64c827d020b57714f44a024372 *R/GenomicAnnotationsForPREDA2GenomicAnnotations.R
6a9dda7895b94f9ef6be15af2199013b *R/GenomicAnnotationsForPREDA2PREDAResults.R
67c7ac4dc4f32b44f91e789a0ae41f58 *R/GenomicAnnotationsForPREDA2dataframe.R
c30e24b0d1f6535d7a213edf77cd8bf5 *R/GenomicAnnotationsForPREDAFromfile.R
7f66307981a79f77dfb6cdaf27eb28f4 *R/GenomicAnnotationsForPREDAGetExpectedFlags.R
4171b891c2cc853638646c6ab2d1be24 *R/GenomicAnnotationsFromLibrary.R
80a9c58253183ee6a6b25d43c3497ec9 *R/GenomicAnnotationsFromdataframe.R
ba62cd7176363517689fa4853b782c3f *R/GenomicAnnotationsFromfile.R
f4bbef2b7826d0ccb2579b92afc05b37 *R/GenomicAnnotationsSortAndCleanNA.R
a964e92903cdf96343d3be839dbfff76 *R/GenomicRegions2dataframe.R
72557fd109644083a8e4c806729511e5 *R/GenomicRegionsAnnotate.R
0bda6f0200dc560356d75a1889862481 *R/GenomicRegionsChrNumber.R
219c762064e36daf26479e72492759d4 *R/GenomicRegionsComparison.R
6cf58432e3d58a356348ee336ae933df *R/GenomicRegionsCreateRegionsIds.R
c0076c4e8e5d016805a69a80f8e4905e *R/GenomicRegionsFilter_neg.R
f3a7bf296a2cb98bbdb3049c58bfda79 *R/GenomicRegionsFilter_pos.R
db41b0e3f1a922587902a08253ea34ba *R/GenomicRegionsFindOverlap.R
530bbe2161821ace8509fa89019f50e5 *R/GenomicRegionsFromdataframe.R
208103a1a70233fc60850723be12349a *R/GenomicRegionsFromfile.R
7bd227342f0793de9d1c87866d61ed06 *R/GenomicRegionsNumber.R
768c86c0db94f862c66acb24407c20b3 *R/GenomicRegionsSpan.R
ae7e7833ef4f337edd88e49c02ebb236 *R/GenomicRegionsTotalSpan.R
eb52230af148331b89b7df1b2dd10b5b *R/MergeStatisticAnnotations2DataForPREDA.R
8c623cc490aebd19b0009a4a1a1fb5cd *R/PREDADataAndResults2dataframe.R
683968d2c5ed91dfec888e92e4fa54f4 *R/PREDAResults2GenomicRegions.R
034c1a44bc1657a9b712f84b4e8b1f5e *R/PREDAResults2GenomicRegionsSingle.R
a21b0518f4eb80f649334dba8e74e4d8 *R/PREDAResults2PREDADataAndResults.R
546e865bcfb5112c621555aac74657c5 *R/PREDAResults2dataframe.R
bf1a30e09ff0347f27714990607c1654 *R/PREDAResultsGetObservedFlags.R
f2ffb06d33a42649573409c76aa64b1b *R/PREDA_main.R
1a2f058a95262487286915aec924ad05 *R/PREDA_main_permRows.R
aaffaabcf5f003ad4e367be28b01744e *R/PREDA_main_permSamples.R
2f36e416d3da5c476a2824891c7db335 *R/PREDA_multTestCorrection.R
834269c92c7c70da8aee594915ab51e0 *R/PREDA_quantsmoothStat.R
858a618a79be36b1d94c78df6cec49f7 *R/PREDA_quantsmoothStatPerm.R
004612161fc8f7442a0d9ea0b887fa2c *R/PREDA_smoothStat.R
f3741b7a46f165cfea30133ced51c03f *R/PREDA_smoothStatPerm.R
72bb58c1c30dd1cddfa45c528cfcc1fb *R/PREDA_splineStat.R
a6e51b5b3abda8c6a2c72ac792301cdc *R/PREDA_splineStatPerm.R
ec932e4b35e713031fbb8f12554a0560 *R/RMAwithCDFfilter.R
385f474bed308cb8c5e78bcb4489736a *R/SODEGIR_GEstatistics.R
5b7a1845c75ec1572a62e8c6bcd135fc *R/SODEGIRpreprocessingGE.R
6905c9b5901e298921e3ae381ce8700a *R/SortAnnotationDataframe.R
6dc80094f8db9a5d6519b0c59a523c12 *R/StatisticsForPREDA2dataframe.R
6aa30c0605159928f1d89f4458a8aafd *R/StatisticsForPREDAFilterColumns_neg.R
8a7b669c46b85a7004ff1b1c3f7fb78a *R/StatisticsForPREDAFilterColumns_pos.R
ef84e6498b70d4d5466a748d8f2310c0 *R/StatisticsForPREDAFromdataframe.R
766713decccefeadf1cb704660b6fa75 *R/StatisticsForPREDAFromfile.R
568eda2964daf3528c65d2df8f07df3b *R/analysesNames.R
41d72be84158da61c4118d1a5b4e532a *R/compareFunctionFromStatisticsForPREDA.R
92ab19e803516787fbb54bf610f65313 *R/computeDatasetSignature.R
e7dfc6f339ce02b6fabb7dee0a9a37c7 *R/datasetSignatureFromFlags.R
4c8c8e688e341392fbfd6994ae358f99 *R/eset2GenomicAnnotations.R
be5c0df8bca00f412570f53c30509238 *R/genomePlot.R
65bae2bcd61b14fac0e35bd1ab510214 *R/genomePlot_improved.R
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d821a43a498390fcddbb7252549af449 *R/getExpectedSmoothFunction_runmean.R
1f59193c44b145535837fc1de3ef3f52 *R/getObservedSmoothFunction.R
8df8fa5a4cd4497881014af59f341b82 *R/getObservedSmoothFunction_runmean.R
62a5f3ed7c74f1751d1db5cb0aa17bf2 *R/getStatisticByName.R
0a7eb9720927c68471b37fe9c3323786 *R/initialize-methods.R
c23a8f80d698863b4d855380d8fee21d *R/preprocessingGE.R
b3db5cee7db1197a8b21baf219e419ca *R/simulations.R
9439571d54f299abf2e5693ef5506e2d *R/statisticsForPREDAfromEset.R
cfc2cc999751b231d979761ee73837e3 *build/vignette.rds
422bc44b297661568dcf2d5c16c3ae5a *inst/doc/PREDAclasses.Rnw
c2532e79d9be9742e204696cb822a233 *inst/doc/PREDAclasses.pdf
9bc4f1833689728519f47d3722e3ce10 *inst/doc/PREDAtutorial.R
1299efb9ebcb410544f6aa172f3512da *inst/doc/PREDAtutorial.Rnw
4dc3b35e3c74ae330c36dfb275d235c8 *inst/doc/PREDAtutorial.pdf
33af923c83a94b28551ac538b3fd24cb *man/DataForPREDA-class.Rd
ec0a80788ea40dd0aebe1551c80b37b2 *man/DataForPREDA2GenomicAnnotationsForPREDA.Rd
0952b87d74c79aa90360628ae0d425bc *man/DataForPREDA2StatisticsForPREDA.Rd
210d905b899868f6f59344af3828e022 *man/DataForPREDA2dataframe.Rd
aecf9cb6244a4f40c316037884011903 *man/DataForPREDAMedianCenter.Rd
1675c4e275cc2d076ef2dea52c55a0e4 *man/GenomicAnnotations-class.Rd
7ed35f44d247dc01c66e38d71dbe95fc *man/GenomicAnnotations2GenomicAnnotationsForPREDA.Rd
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0806e9e8f1dc056aef6840be14bd27ac *man/GenomicAnnotations2reference_positions.Rd
ff8c9b7c9a4e2b3409dfd4961abfce0d *man/GenomicAnnotationsExtract.Rd
261de71232b0fa97c49e087b4f3be26b *man/GenomicAnnotationsFilter_neg.Rd
74dae4db1fc2377f6014ac77e52a88e2 *man/GenomicAnnotationsFilter_pos.Rd
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84942bea651391818d105bd2e3a107a8 *man/GenomicAnnotationsForPREDA2GenomicAnnotations.Rd
96c8cb21641998efa818bee7f71a3450 *man/GenomicAnnotationsForPREDA2PREDAResults.Rd
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9cfabc87d00228a4ef3ffd388c237e2a *man/GenomicAnnotationsForPREDAFromfile.Rd
8c427ab6c92260e844a98772fdd0420a *man/GenomicAnnotationsFromLibrary.Rd
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6c16e0dac0597f01d79beab6841d02f2 *man/GenomicAnnotationsFromfile.Rd
cb68a51fa4e423e1c83ed1edb9a12d7a *man/GenomicAnnotationsSortAndCleanNA.Rd
a7d8f1b62000d67efeee7b52387db978 *man/GenomicRegions-class.Rd
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99f06631bf54d4ed9688cac16deef5ba *man/GenomicRegionsAnnotate.Rd
a13166d39690be511e607b8b72cdfa73 *man/GenomicRegionsChrNumber.Rd
9de49d589162d7e74b290c65f3ff8f04 *man/GenomicRegionsComparison.Rd
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35a36292a939adef00801adc0219119a *man/GenomicRegionsFilter_neg.Rd
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981a3d77cf330ddc3b33d18d19066155 *man/GenomicRegionsFromdataframe.Rd
a1805b6a65abe2ad61d164ac4999724d *man/GenomicRegionsFromfile.Rd
f77d9ea1dbe83529a0e531876e1f8bc0 *man/GenomicRegionsNumber.Rd
119877ff3905de1b6331f34137600824 *man/GenomicRegionsSpan.Rd
9765cb308f9317e3cb0d84e1f82fd7d1 *man/GenomicRegionsTotalSpan.Rd
7f82ac3cadafdbdbe502f9aaf9e95198 *man/MergeStatisticAnnotations2DataForPREDA.Rd
6c41893559d0e6d8120ea73d5a9024d2 *man/PREDADataAndResults-class.Rd
5e833d1dee0e99b0e66acbb7a2ca32e1 *man/PREDADataAndResults2dataframe.Rd
9a5ca0cca0518f53fc4e7aa812c98542 *man/PREDAResults-class.Rd
9f8bd25c72a6d20cc43eb1f142808cfe *man/PREDAResults2GenomicRegions.Rd
7cf751f9a738ffb75b9b35fa80818abb *man/PREDAResults2GenomicRegionsSingle.Rd
08bdbe84e450bf430f7326da5ea9f088 *man/PREDAResults2PREDADataAndResults.Rd
a463ab0b8e5e8852a03c4873a714bec6 *man/PREDAResults2dataframe.Rd
d810e5b8742ffc3867f5e303c27c2497 *man/PREDAResultsGetObservedFlags.Rd
c0492d2c6ed1e819d27fb51cd2e6c1d3 *man/PREDA_main.Rd
493ef4fd195dd6ce046b8e0dc95318e6 *man/SODEGIR_GEstatistics.Rd
98e01500e606e78a41a00d7daef7e57c *man/SODEGIRpreprocessingGE.Rd
0df6fb99ec6edfda42f5aba2e42797d1 *man/StatisticsForPREDA-class.Rd
ce9482d4040bc9cd6dd2893e40a51008 *man/StatisticsForPREDA2dataframe.Rd
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bea72078d300a10280aa6e44a912d693 *man/StatisticsForPREDAFromdataframe.Rd
18fbdd98dc5e1910e9c09477c4b80cd1 *man/StatisticsForPREDAFromfile.Rd
c4b9220c14a95034f591b4f0770d34ae *man/analysesNames.Rd
d4756b89b3f5c6d5dc579bb984e1de0a *man/computeDatasetSignature.Rd
3bd014536d0c413d4bff322ca13875db *man/eset2GenomicAnnotations.Rd
9a79393ad5a0ecaf51bec227ef055654 *man/genomePlot.Rd
2a95748925f3dd19a6ae2bd5c31ae6a8 *man/getStatisticByName.Rd
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84be8290359a7ee6beb56c3148f34b5f *man/statisticsForPREDAfromEset.Rd
06eaac34816d3a979a91a67e54442705 *vignettes/PREDA.bib
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1299efb9ebcb410544f6aa172f3512da *vignettes/PREDAtutorial.Rnw
4d735b62112670e13613557ad9b4a51a *vignettes/images/PREDA_inputClasses.png
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a3685a6acd8e7c0c5f72ab99ea8c1cfa *vignettes/images/PREDA_outputClasses.png
305aa7f4a0810d949489a83c8a45b195 *vignettes/images/sodegirWorkflow.png
