aa0e6bdd5ff5dc3376755ea92abb7939 *DESCRIPTION
3551289a2e637d8aca92d9e7903547de *NAMESPACE
f15a06fe562843f13073d6986492eb3d *NEWS
9dd7d0e69be407178609f212413d8516 *R/AllGenerics.R
d0944035230a9618849bf5d2251723dc *R/Modstrings-MaskedModString.R
be45709f1c51ba0427eeb3006a2dbd80 *R/Modstrings-ModString.R
e9c3b36b03aac441886e2ee3015f0e39 *R/Modstrings-ModStringCodec-data.R
716e0dc0fc3fee88681926d60ed910de *R/Modstrings-ModStringCodec.R
9c5314a7de30ec66992e1fd0d44b6f76 *R/Modstrings-ModStringSet-io.R
b261b59bc04dde59fe1557c232360ce5 *R/Modstrings-ModStringSet.R
b2ec99887b8d17fa1a4d4aef248d45f5 *R/Modstrings-ModStringSetList.R
ab88081d20b6935ff92e8865132cd83b *R/Modstrings-ModStringViews.R
f1be10c4d99c494e77e6559d40ee869c *R/Modstrings-QualityScaledModStringSet.R
06f7a66ecb0ac96b2ab86170584edda5 *R/Modstrings-external-C-calls.R
c7db48f2eb128ee8ab5e81a296dd2348 *R/Modstrings-external-functions.R
44d57913710eb2160a904a8ebbaf09e2 *R/Modstrings-letterFrequency.R
5e877906d4e6667946d22c75782b00b4 *R/Modstrings-modifyNucleotide.R
452321d72e8e4b0873f5557ddb2f8481 *R/Modstrings-replaceLetterAt.R
93fc2e0fef9d3e9ffd1599fd5ee9952c *R/Modstrings-sanitize.R
eac38a276a70d4020431fa50077f40d4 *R/Modstrings-separate.R
4370cbcc3ee1d384b45839599bdac50d *R/Modstrings-seqtype.R
9bc7e3f67070c3c2d9871d668e4f11a8 *R/Modstrings.R
92e3c97ba6fc950225c61425a0cbf411 *R/datasets.R
38ec8b0dfdf2b9de5c243437ef4bdc6a *R/utils.R
4d373ffb1c98ccc10ad42c832cfd6095 *R/zzz.R
5e5042103237d5e6a4d4be1361f4a733 *README.md
6d2b45cff1f7e7251b39d71682d941fd *build/vignette.rds
29ed166acc61dbda599046899d188ba9 *data/MOD_RNA_DICT_MODOMICS.rda
a3b2197d96605bdff5c3ca3665ec1bcd *data/MOD_RNA_DICT_TRNADB.rda
d87fe2b373ed6087036b7a995abc4432 *data/modsDNA.rda
04b3f73feafb5759cc5b2c5768674ebf *data/modsRNA.rda
d0eff14c71842c4fc87072209fe8522b *inst/CITATION
e8deeba12d7ca754a5db011c3a165165 *inst/doc/ModDNAString-alphabet.R
d047cf7d021bf5530a1c1f88e5ea1783 *inst/doc/ModDNAString-alphabet.Rmd
f482f04037d9a355ec669a3505b1ce3e *inst/doc/ModDNAString-alphabet.html
bc3670af9f9e2ce0a9e5c40652ea7e1f *inst/doc/ModRNAString-alphabet.R
f8a2686561b26067bb991492c34bf9e8 *inst/doc/ModRNAString-alphabet.Rmd
f7fe2a30eadcc4ce38ea5374045a03c3 *inst/doc/ModRNAString-alphabet.html
9a3bfcbcf71761087267d52619283f16 *inst/doc/Modstrings.R
806f61fa3bd3bdeb21b8d2fca16a594a *inst/doc/Modstrings.Rmd
a71635f3b4126d65db5a40fae6e7ad5b *inst/doc/Modstrings.html
07d0e8e0e256add00c78f0ed99cb2de0 *inst/extdata/DNAmod_modifications.txt
2d14b8023fa6e2b70734a16018c80cbd *inst/extdata/Mod_DNA_codes.txt
5bf65f575057480b17b2871894866d37 *inst/extdata/Mod_RNA_codes.txt
def7deaef9e99d98f241fc27bf7a0a55 *inst/extdata/modomics_modifications.txt
219db2ff8ee3ef9925c3bc3c14f67f6c *inst/extdata/tRNAdb_modifications.txt
5d27fe3da75cc2f6e98acf8a497e0c32 *inst/extdata/test.fasta
00ce327a44d45ebc13170a9e34a5746b *man/MaskedModString.Rd
623a3b4aebb8551bc681c88380258093 *man/ModDNAString.Rd
5f63f5796e30df6efa80d6ec97f38fcf *man/ModRNAString.Rd
16cf54f5743bd11a7ee13c8aadd05d7e *man/ModString.Rd
d2e066a183c271b53fc7fd331a9e3c70 *man/ModStringSet-io.Rd
b077d1d57f0a2e4a9fd67c2866cbbee4 *man/ModStringSet.Rd
e82f167719f505ae328fa88e7abbfc53 *man/ModStringSetList.Rd
0843b03cc6476d75226e03953f1f4dcd *man/ModStringViews.Rd
aaacac18183f8e47ab426997af18271f *man/Modstrings-internals.Rd
6407b19b8f05590b7222058e6c655b67 *man/Modstrings-package.Rd
44680cb1270685873068012f4d375a69 *man/Modstrings.Rd
39f89f78f11dc468552db40f2cb88917 *man/QualityScaledModStringSet.Rd
e35c1f4d93587c59b76f728bf710bb72 *man/alphabet.Rd
1b873b31481b1504ccc25348f7bca21d *man/letterFrequency.Rd
0ddb91df609cbe71f765a0e4e5288a61 *man/modifyNucleotides.Rd
c0ff8e41a368355ae3f10ed9839ee07e *man/replaceLetterAt.Rd
a227c92224dee5c0e0add137c8e10778 *man/sanitizeInput.Rd
0c30a0bcd91b7d7fee171b39181a5e6b *man/separate.Rd
f8ee76a99b6b47db0c793d15a9260c72 *tests/testthat.R
31db6dabb34ed7dd7a49447582cca263 *tests/testthat/test-0ModString-Codec.R
24c914bb7fb1849d58469f339be49296 *tests/testthat/test-0ModString.R
f074da5eb567ba128e53aa633c9258f2 *tests/testthat/test-0QualityModString.R
d540d14a6aac45eac8f33a3d369372c3 *tests/testthat/test-1ModString-io.R
260c3a8aa7799c98a13ff11d18dc27c7 *tests/testthat/test-1seq-features.R
a36599a8914edfce46d58aab4f11a3ea *tests/testthat/test-2comparison.R
aef4b8a5cbe43ba7d663ce630c2440ea *tests/testthat/test-2matching.R
4612feca9bcf6ae32c72020d49749fc5 *tests/testthat/test-3seq-changes.R
31afc42543d0da016e940d23452b2793 *tests/testthat/test-4separate.R
ab881cedfa0b7a9459effc3c0b694530 *tests/testthat/test-5MaskedModString.R
3e08391d059e79a477a6dedf69497617 *tests/testthat/test-5sanitize.R
0002d12c31279fa291e4e2e9c22e40aa *tests/testthat/test_DNA_codes.txt
d047cf7d021bf5530a1c1f88e5ea1783 *vignettes/ModDNAString-alphabet.Rmd
f8a2686561b26067bb991492c34bf9e8 *vignettes/ModRNAString-alphabet.Rmd
806f61fa3bd3bdeb21b8d2fca16a594a *vignettes/Modstrings.Rmd
7375ea07bca46c783d01444b093a17af *vignettes/references.bib
