2ab62874f8ace81d62522a69fbc1315b *DESCRIPTION
b3ee0cfdd722efeabb4d7f1f44afe7df *NAMESPACE
1e6b3ac69b4739fbe86f721b2dd53f4f *R/converters.R
55e422772415446fe005f590556c08ac *R/dataProcessPlotsTMT.R
a4098546111ec10f73adabfa28f77400 *R/designSampleSizeTMT.R
309b97513d9be89cdbc80b9b1d346942 *R/groupComparisonTMT.R
b8a395b37f703ed7558a171164517f91 *R/proteinSummarization.R
78096bcea7bc7f719626318a7651cbf1 *R/utils_MSstatsTMT.R
eb00e8417cf48db71d3cadb3d2c55a94 *R/utils_group_comparison.R
3ee35048ffe9b494d7b65d2a67f76af3 *R/utils_summarization_checks.R
c70ce120d47e8b50f55ff2f465cfe062 *R/utils_summarization_methods.R
963babaf4df643ede4086885b8436b2f *R/utils_summarization_normalize.R
86ac8f6f37779d2f9f25d90c54d082f2 *README.md
5b3c36310703083096793445d90b4355 *build/vignette.rds
bb0ba441c893b889da0b075f9f9194ad *data/annotation.mine.rda
4fdbcaa5840c7d028da434fad7b5a291 *data/annotation.mq.rda
a1ccdb20a86d8b8d64650b9df8af8b79 *data/annotation.pd.rda
7bf85b452179618f3ac167f07bd4ef71 *data/datalist
32eebedb80479cc4bee071749efce412 *data/evidence.rda
d8dba118b81b3f43650ccde718801306 *data/input.pd.rda
fc57fb2c72500a47a4349c3096b15901 *data/proteinGroups.rda
d4367e49f3f708127960306fc8a10f5a *data/quant.pd.msstats.rda
4ef982fbeffc9b0377ec3162a58ef1b8 *data/raw.mine.rda
f540608254ef19799b4f5728f042177f *data/raw.om.rda
4ef9dfe3a2b0404f158f13fed8ec543e *data/raw.pd.rda
7bfe1cca0b78924ff7c85c1741829c84 *data/test.pairwise.rda
204d0179668bce3b101f4e6beacabfae *inst/CITATION
ef945072e0610207243ec5aa807b13dd *inst/NEWS.Rd
3b2fd52858abd2136185222280fb3800 *inst/doc/MSstatsTMT.R
e26497a6b835185bd90af6b6ca5944fd *inst/doc/MSstatsTMT.Rmd
adc54d0e9cc6660dc952392600f01e23 *inst/doc/MSstatsTMT.html
beb2b00dd2fe558feab85ced291950dc *man/MSstatsComparisonModelSingleTMT.Rd
6b4fa782cdc522dd28e46b528493e1ae *man/MSstatsFitComparisonModelsTMT.Rd
531c19d65c336e6dbdbc2f0f6c3106f5 *man/MSstatsGroupComparisonOutputTMT.Rd
43caccc477407d522046b59e010bdbd5 *man/MSstatsGroupComparisonTMT.Rd
8c510c1399e2cc02bc76f9ce16d63e9d *man/MSstatsModerateTTest.Rd
93999c29af88a08f7018ac1353ad210a *man/MSstatsNormalizeTMT.Rd
af9a773d1436bde92256f3d4d338a7a2 *man/MSstatsPrepareForGroupComparisonTMT.Rd
e9733abc2351e1be66df896c8aa8d950 *man/MSstatsPrepareForSummarizationTMT.Rd
e09d1a20ece58dadba2207bb985507b6 *man/MSstatsSummarizationOutputTMT.Rd
93f5f55172c2621d5f07f650bfefcbc1 *man/MSstatsSummarizeTMT.Rd
51340c3bf05b07705560913f00816294 *man/MSstatsTMT.Rd
b15594cd076d9c81f7663d46b3bc7d32 *man/MSstatsTestSingleProteinTMT.Rd
871463ce993cb02017ee5e7e4e3c603e *man/MaxQtoMSstatsTMTFormat.Rd
9633e5be127c398c4d1e2f1d6a3be77d *man/OpenMStoMSstatsTMTFormat.Rd
dbe82d52e3379b13fc970f321fdaaa94 *man/PDtoMSstatsTMTFormat.Rd
382446cff7a816a1ccf01f32e7db82f0 *man/PhilosophertoMSstatsTMTFormat.Rd
69852e7522768359f3237187a778978e *man/SpectroMinetoMSstatsTMTFormat.Rd
075d15a8409d1d6d405235ceb6a18d0d *man/annotation.mine.Rd
ec32ec8db855e4c6bda240f1e56b35b5 *man/annotation.mq.Rd
622184ed57e34909eff641668c132fb5 *man/annotation.pd.Rd
6e6baf626409a11781835f12d5d35861 *man/dataProcessPlotsTMT.Rd
1b0f9588cd2401048c7427552f7270d0 *man/designSampleSizeTMT.Rd
2ca0b1e7a2637103900ddb790a373831 *man/dot-calculatePower.Rd
31c40331d09db5c6051650e40334092d *man/dot-checkContrastMatrix.Rd
1bd036bbad13c19dea61e06e6172a162 *man/dot-checkSummarizationParams.Rd
441e597ce30496c1506ecb2488e23b01 *man/dot-countRunsWithNorm.Rd
3c3c04037ece7a0a0a24c9db11bb8bb7 *man/dot-documentFunction.Rd
b6033f787801f9041e53ee677f6df97d *man/dot-getMedianSigmaRun.Rd
46f1ff7647779875b690b0309f79dbcb *man/dot-getMedianSigmaSubject.Rd
582651bffb49971b8a349bc45d60500a *man/dot-getNormalizationAbundance.Rd
9c72b135a2e74456e407da116fc081ed *man/dot-getNumSample.Rd
2a1c5e3a747bc561290bfd3a6fc24087 *man/dot-getPhilosopherInput.Rd
914a3fe311dd96da1bf6d7920b92a08c *man/dot-getRunsMedian.Rd
7a306ca1a61af29c37511b85cbaffa6a *man/dot-getVarComponentTMT.Rd
c8df07887f45c8f14c363a803f134b8d *man/dot-handleSingleContrastTMT.Rd
75975801107e31314fe6c06ea6c8c576 *man/dot-logSum.Rd
a9ad61b7eba5277a3475103d8bf2f91c *man/dot-logSummarizationParams.Rd
ed104ac1a3e030ce8272352445313067 *man/dot-makeContrastSingleTMT.Rd
f9e0cb08e7b0e66cdf4bbaabd67a4bb0 *man/dot-makeFactorColumnsTMT.Rd
60ef9abf6bfac6c1638bf284a07f9919 *man/dot-medianPolish.Rd
2a3167995bad18a94faa9e88e4f3c03e *man/dot-normalizePeptides.Rd
aaea7c9d3d7bc8715381feba2619d002 *man/dot-normalizeProteins.Rd
aa0d400625392e05797ffafa240735e5 *man/dot-prepareForSummarization.Rd
1cb2f22561d0b6aa4111a2277f1aaf3c *man/dot-removeRedundantChannels.Rd
9e85f55dba1bbd2a7ba6713db1c4800f *man/dot-summarizeMSstats.Rd
093df1787ad33bbfb9c3966d5ac7a824 *man/dot-summarizeSimpleStat.Rd
03e45a73f0b6012bb66cd75f16c42b12 *man/dot-summarizeTMP.Rd
da1daa0245604b7aba01f952bc08baa5 *man/dot-summarizeTMT.Rd
5f28421315350d5f3264a1284ed1c0be *man/evidence.Rd
8f27fbc7f82a8105e30bbdec35d055d6 *man/getProcessedTMT.Rd
d2426982f713fcff42a15b32ea25e002 *man/getSummarizedTMT.Rd
1eb1d4d1ec8f30c6b2ea99d837cf618e *man/groupComparisonTMT.Rd
59a54b9801456b8b1212268dfdc30664 *man/input.pd.Rd
83ff5809250d434c52a26470c6edfff2 *man/proteinGroups.Rd
c68e6ed0ea2762d5b2f85bf9c89e02a5 *man/proteinSummarization.Rd
b707aba43e8d83d41348828acaee8592 *man/quant.pd.msstats.Rd
83387f10a6d2bf493592376cec34813d *man/raw.mine.Rd
c56c351cf72b41315a3e343fcc28f28a *man/raw.om.Rd
2cc31d3e0f78e949c6e52a2ecf67676c *man/raw.pd.Rd
a001a3d997b5b2e352513fb3a91d8f7b *man/test.pairwise.Rd
062251a5673946897821ceb4fd68b567 *tests/testthat.R
d8cbf8b0356230f1d1391da32329ebc0 *tests/testthat/test-PDtoMSstatsTMTFormat.R
52f8c8f0be2f5136798d8721302a19ce *tests/testthat/test-groupComparisionTMT.R
eb16edef746ffff8f6b8a4685ebd63ea *tests/testthat/test-proteinSummarization.R
e26497a6b835185bd90af6b6ca5944fd *vignettes/MSstatsTMT.Rmd
