ff3c57a984cfef99477f8783083b235b *DESCRIPTION
3be9082ffa7d32f11d0535f096a8ee7c *NAMESPACE
6cb446b29cb19dda41cc6cbbb562df27 *R/DIANNtoMSstatsLiPFormat.R
89836b840ccf31e4dbbb62733a371b68 *R/MSstatsLiP.R
c628df734fd57e3af01fa67f50258490 *R/PCAPlotLiP.R
8d42c35dfc9f53d46cfc767e51577b81 *R/RcppExports.R
7251be8e495545d6143b14e2311687ad *R/ResistanceBarcodePlotLiP.R
2ddfabfe198f030e01661699f1673d76 *R/SkylinetoMSstatsLiPFormat.R
e0fd933301c9e922fd3070f069c7df22 *R/SpectronauttoMSstatsLiPFormat.R
72edec5aa182446f7ccab8c68192c6ae *R/StructuralBarcodePlotLiP.R
642bab1d9ec5eb794f9905b0d01ddb94 *R/calculateProteolyticResistance.R
5986a5783bfcae068cc54efc01c90cc1 *R/calculateTrypticity.R
919e1d6e549e227045a50f13139cc8c7 *R/correlationPlotLiP.R
c59b9ac97105d708bf97970fac1e31eb *R/dataDoc.R
3e48dd15d920388700357151682d8777 *R/dataProcessPlotsLiP.R
e3b038d8affa8628d129ac21fa2a0624 *R/dataSummarizationLiP.R
4a9a5fda6814bb385cc9562df0b8487b *R/groupComparisonLiP.R
f8647a64990d859dc8ce580cbff5279c *R/groupComparisonPlotsLiP.R
b5072fcb9a26dbea683e03240551517a *R/locatePTM.R
b4c139afa02d7907c5e2be5255a8a1bc *R/msstatslip-package.R
9239f4f6437ff3d44c18ef949d65ec1e *R/trypticHistogramLiP.R
10d3e34bfe926b63a876a8633da20e07 *R/utils_checks.R
86c0ae862e45d3c21d7e44a291aa3072 *README.md
c44a6bb95fb7fcac9dd062b7798b06d6 *build/vignette.rds
792c8d64dcad2e35be7b81afcd4d9a84 *data/LiPRawData.rda
126faa602193346532a249ba44f7931b *data/MSstatsLiP_formatted_data.rda
078238b43f3e66ed1d21b9798a447707 *data/SkylineTest.rda
7ddc393503088dc36600362be8fdc362 *data/TrPRawData.rda
5d7a5700b15418627a2b08d02a9bde24 *data/model_data.rda
1478b6838e32847b50d2c602ad029dc5 *data/raw_lip.rda
b9b1f6e6be5ce8120033633d03dc6beb *data/raw_prot.rda
822984bef1f4f9421f1d7954caab6a6c *data/summarized_data.rda
687fec1c2dc26025eb20b93e769d9430 *inst/NEWS.rd
e889aa54c08417770abfb0d19c23ff12 *inst/doc/MSstatsLiP_Workflow.R
af3c92d5de8535613a73e3d8c6aa5688 *inst/doc/MSstatsLiP_Workflow.Rmd
62a385ed5a018c3f940d61c005cd8f97 *inst/doc/MSstatsLiP_Workflow.html
488796715b28c642b37e8be3ab7be3cf *inst/doc/Proteolytic_resistance_notebook.R
28dd0159d2833af393b763c38ce56983 *inst/doc/Proteolytic_resistance_notebook.Rmd
7a0dbcaff5a4a1b115a5849d6c3f889b *inst/doc/Proteolytic_resistance_notebook.html
315136d16ba8a885f4a3f0534a0245d1 *inst/extdata/ExampleFastaFile.fasta
e0972f15b5fd84c42559a4f74fff3502 *inst/extdata/O13297.fasta
e7769c0b3ab37b01fcee0de4f8124c66 *inst/extdata/proteolytic_fasta_data.fasta
0700615505f604b9b37776a8caa581a1 *inst/tinytest/test_SkylinetoMSstatsLiPFormat.R
5e0252e31e9894b9f723a55e776ae344 *inst/tinytest/test_SpectronauttoMSstatsLiPFormat.R
c40a4e7c3c2aca18a4ea6e305e5eb812 *inst/tinytest/test_dataProcessPlotsLiP.R
195706590367e61f99fb82b12c85b7f2 *inst/tinytest/test_dataSummarizationLiP.R
a3b6bfbd1544675a94403e8c2dbbc7bd *inst/tinytest/test_groupComparisonLiP.R
4b7744d0c6c52be76ef3b26ace00cf7c *inst/tinytest/test_groupComparisonPlotsLiP.R
0fee56a7dc0317282386fd76756d17e4 *inst/tinytest/test_trypticHistogramLiP.R
7987fa415ebd237575d77e2e4e3cd5df *man/DIANNtoMSstatsLiPFormat.Rd
55eb55939e29b23c2f0ef17b71f24761 *man/LiPRawData.Rd
d5a72b7dc225e5b6fa6769907dead0ef *man/MSstatsLiP.Rd
1fa3d3539b6e4e65739156d199c8ab86 *man/MSstatsLiP_Summarized.Rd
0c6571979b15c0a35f443d74a736aa72 *man/MSstatsLiP_data.Rd
d52fe9db7cf267ded117733e8535ba9b *man/MSstatsLiP_model.Rd
f0c3c1de64e5c25a0c3f25ddd5e827c1 *man/PCAPlotLiP.Rd
bab05ba50ddac6c958d307b3522fc5fd *man/ResistanceBarcodePlotLiP.Rd
309fb785ee1544a86cb7ff29cc7facd4 *man/SkylineTest.Rd
ac318ddbe10991da7b836d5392b4e895 *man/SkylinetoMSstatsLiPFormat.Rd
be91dd927a20db58a473d8ba0c5382a1 *man/SpectronauttoMSstatsLiPFormat.Rd
67beef101b5d968f9e988d87c205b7e3 *man/StructuralBarcodePlotLiP.Rd
39b3b6612950e82524db322c95ea14e6 *man/TrPRawData.Rd
14b9586541f59987c1b1569949e4664d *man/annotSite.Rd
9c25bb220bd45f52f3b7e3aae228ff34 *man/calculateProteolyticResistance.Rd
c1252ab71c55ee4547d77ceea243444f *man/calculateTrypticity.Rd
faf0007e7764692d14f9b11406df45f4 *man/correlationPlotLiP.Rd
85e019a4c7f15cb029f11fe37468d4ac *man/dataProcessPlotsLiP.Rd
afda4771631deb32d6f0c30d289d9a0e *man/dataSummarizationLiP.Rd
6aea5ade810b64bd8c00aa8c5a0e81d9 *man/groupComparisonLiP.Rd
f8e29e55cb329289294fd8833cc494b5 *man/groupComparisonPlotsLiP.Rd
510fe011a5e81e58a22ad66d66bdfcdf *man/locateMod.Rd
f388b98104405cf644e61faccaaf51bd *man/locatePTM.Rd
94ce1edd8923b662d575499eb6eb80a5 *man/raw_lip.Rd
c958f0e823f4bbeccd8e091b68e05a8c *man/raw_prot.Rd
b3d761db8658f1df85be7508d52ef3d1 *man/tidyFasta.Rd
956779fca4bf83948838208c41c245f7 *man/trypticHistogramLiP.Rd
c8e671d2afc6a1d45661d2fd29922c96 *src/RcppExports.cpp
a6885e20250861a81d82bbbe4b83b382 *src/model_adjustment.cpp
2517fcfaf57610ee8de46729689764da *tests/tinytest.R
af3c92d5de8535613a73e3d8c6aa5688 *vignettes/MSstatsLiP_Workflow.Rmd
28dd0159d2833af393b763c38ce56983 *vignettes/Proteolytic_resistance_notebook.Rmd
6262b17134c3ff7c6fee554af6a3cba2 *vignettes/Proteolytic_resistance_notebook.nb.html
