3bbcf5ffb1434668cc8f69b1915dfffc *DESCRIPTION
c2d0a6612bf09ea12762e1f3e2e743fa *NAMESPACE
5fd05779f409174893027dc58860c4db *NEWS
24928d1e9c48716899a12188750a18fb *R/AllClasses.R
2035109a3762987746b28c10c307df02 *R/AllGenerics.R
5183b0be26cd1134e400e3d1146b891b *R/MSnID-methods.R
68786c99735aa18721f958c07b61d997 *R/MSnIDFilter-methods.R
a5b8e9f1dc680aca79f18b142e84d341 *R/add_mod_symbol.R
8dacb9a6871c251c608aaf78c4704504 *R/fetch_conversion_table.R
e9b3fa61f7a35a768261477ceb503ed5 *R/map_mod_sites.R
a2184d0d9f0f91e1efaae2c8cead7b5f *R/optimize_filter.r
a244705c271fbb8a24bff2f84d42adfe *R/read_mzIDs.R
e2029375074ccf1667dec50ba5df6fd1 *R/remap_accessions-method.R
39ae239141ca0ddb022366c7d669e4cc *R/remap_fasta_entry_names.R
8766d1da43070a62ac56516b597fe861 *TODO
f96218c23415adc14a6f8f5285b3a490 *build/vignette.rds
383bef793cbe6efc71933e28b33d0ba9 *data/c_elegans.RData
fdc4aa2f1b4f1c2a379383493baba053 *demo/00Index
07bcdc8b07ef7e486d8a6c1cce6c2ffe *demo/c_elegans.R
fae947bc5f8fed1816c1fb424e384e44 *inst/doc/handling_mods.R
9421b9a4f856a0445ac2d432a0326a1d *inst/doc/handling_mods.Rnw
066b2e2fc4642990f68bebd9d25a0235 *inst/doc/handling_mods.pdf
de2b208a77a36f07bf3b3e02980f9d7c *inst/doc/msnid_vignette.R
c50af06801f155429a75086fb0409baa *inst/doc/msnid_vignette.Rnw
1e3f98da1fe5e047a9378564a62b2685 *inst/doc/msnid_vignette.pdf
d2173e3da870dbcbc851ca94631539df *inst/extdata/c_elegans.mzid.gz
112cd3f7b3a607628bfc42b55e655d10 *inst/extdata/for_phospho.fasta.gz
2b26d93717433ba4a160bc0fc0d9729a *inst/extdata/human_brain.txt
838e3f947096556e652a44643354a373 *inst/extdata/phospho.mzid.gz
854fccb6f15d3563a892c42433746c68 *inst/unitTests/test_apply_filter.R
3411e5959436850283a12577a9052f84 *inst/unitTests/test_data_load.R
2ec6e58bf9e7779c11b850191a79d4a1 *inst/unitTests/test_infer_parsimonious_accessions.R
898167367a0318a9091136a897898389 *inst/unitTests/test_irreg_cleavages.R
a6763ce48743e9befab978dc3626e578 *inst/unitTests/test_missed_cleavages.R
5826bacea1c57741281a0a077a19f9c2 *inst/unitTests/test_optimize_filter.R
25a2b4ae317d321e346db3ec3d9da9f7 *man/MSnID-class.Rd
c74837412087b7353761356f43549302 *man/MSnID-package.Rd
d9a19946957a48366598c0cd228810d8 *man/MSnIDFilter-class.Rd
c0b2c67f3142b9597286dcad7d323cf0 *man/accessions.Rd
7f6f71a12206fef877abf4a175a66794 *man/add_mod_symbol.Rd
3f1656872629531ba06bf549ed40c99a *man/apply_filter.Rd
f0a8b1e4246acf52c4de298c5976cf67 *man/assess_missed_cleavages.Rd
ab521015ce07007f5a4179386b5e4462 *man/assess_termini.Rd
6bfa9c3658345ae968221427b9528b0a *man/correct_peak_selection.Rd
cea74bfdb399cc4a6a34e080862e73f9 *man/data.Rd
65addba8bc31f296f267d28b18a67d87 *man/evaluate_filter.Rd
77c491b949a46a9d5af9db06df8a2393 *man/fetch_conversion_table.Rd
624d91b3e4a35363eac5b5f3555faf8a *man/id_quality.Rd
cf014317239afc922e0086a67bfc1d99 *man/infer_parsimonious_accessions.Rd
971ff257b4c44158230b7a17f3087e79 *man/map_mod_sites.Rd
9b6726690ce0e7323d610bf485c19655 *man/mass_measurement_error.Rd
c28500f1a574f583e0eaeb497bbd7853 *man/optimize_filter.Rd
aca164454c4abb89c38a3f4b64d47cfa *man/peptides.Rd
6416f9a1fa849bedeef84a2008c9483e *man/psms.Rd
f9217a9461c860c58b901a590a65c95e *man/read_mzIDs.Rd
d91a2841514502855aed848b93f5aa9b *man/recalibrate.Rd
35d1253c7855574a2e3870b00d705ad2 *man/remap_accessions-method.Rd
c2c8b5f6ad5a3baa2a5861499e9935cd *man/remap_fasta_entry_names.Rd
3902025b4bde4bca73ead2ae20629766 *man/report_mods.Rd
fb1a7c31fd4c5d35732c25bfea509659 *tests/runTests.R
9421b9a4f856a0445ac2d432a0326a1d *vignettes/handling_mods.Rnw
bdec7f6608425c0441b5be26d9fb5fd2 *vignettes/msnid.bib
c50af06801f155429a75086fb0409baa *vignettes/msnid_vignette.Rnw
