ee079f6818784f0435a008e5474a0b08 *DESCRIPTION
b49d458a7a65a25741f67e46c207af33 *NAMESPACE
8059e1765112e69c9b95a2fbb92e2bc4 *NEWS.md
4b4a1074aeeb1190c2b7fd2dc48a3dbf *R/AllClasses.R
a415d93419157fed3f93b991f38af0d5 *R/AllMethods.R
99208b5499e0cc6cbeb1ffcb16a9bb27 *R/CreateTabulaReport.R
512ff866ca993ca0bd8efabf7b4b8e33 *R/MOMGlmTest.R
d7e2048e190a0678ed59246caa8b4009 *R/MOMSurvTest.R
01c34f6f4b589b55325e2d84aac2b4ac *R/MultiOmicsMethod.R
6c789f6b0f9193f58b45d4d328d4f413 *R/MultiOmicsSurvivalTest.R
810c242306f5a220a8cd8be41cb21a56 *R/PlottingMO.R
d05f96abbcb6bd6fe978036222446751 *R/Utils.R
20a9f218e30174dcaf369df88fdcb725 *R/data.R
5941c358f11c2e8fdcd32d8def80088c *R/extractSummary.R
26d267b6a989183b5979dea8697609ce *R/guessInvolvement.R
9a6cbc10c867be81248c422128ad6f33 *R/houseClip-graph-processing-functions.R
ae76b6e3b67ee94c0a6165ac08ee7720 *R/houseClip-handle-graphite-pathways.R
8d0becfc3cb7cf3edf2dfdff143a4736 *R/houseClip-pathway-relations.R
04e7c27e29f3955c2468783bc0ac3025 *R/houseClip-pca-covariance.R
eb89dc275c605da305eb7be3a47f62c4 *R/houseClip-pca-functions.R
6cda498cf0930a8baeaa4b580e5267bb *R/multiOmicsGlmTest.R
d9fe8fcbe96a1afa6bad60851a32580f *R/resamplingFunctions.R
c6e739887556663f7a023005805443e6 *R/supertest&frequencyplot.R
77cc57f14240be79a081e9443f4ee7c4 *R/survClip-backbone.R
6a56acf0d11a5058dcc76c2c80c2982c *build/vignette.rds
c8350ce3bb798e1c58badd0a1f96c244 *data/multiOmics.rda
4f846b6326c3b85b6f9d928785567026 *data/multiOmicsTopo.rda
6871382db0641c5961d65cb367e525ad *data/ovarianDataset.rda
d5f5439ab98c952fbaa2125c1f9e7c7f *data/reactSmall.rda
1fe1d922d8b9fd55e3f3678f1425d185 *inst/CITATION
7d4169853550a22f0306efe1ff5976c0 *inst/doc/mosclip_vignette.R
fc5b990b0a4590d61943d2967ecbb18d *inst/doc/mosclip_vignette.Rmd
5325b4989f3831873338b4cd1e7765da *inst/doc/mosclip_vignette.html
83532d49180b543dfac8b5e0e350dfb6 *inst/extdata/ReactomePathwaysRelation.txt
9cee914bf5f301683800c4cae7bd6bec *inst/mosclip.bib
80081bddbd860741c2da6d5a433d23aa *inst/script/downloadPathwayRelation.R
cc6aa7be4de5f3d475f0e9cefebdc806 *man/MOSClip.Rd
92ca1138345d99c16d4f99e4577ac294 *man/MultiOmicsModules-class.Rd
c4d89e62a7b492db44e0c76c3525f9a1 *man/MultiOmicsPathway-class.Rd
29d2936867a310831d5f06fb3ee7734a *man/Omics-class.Rd
df2383e1921aec45c7a6c00ae1a1e21f *man/annotePathwayToFather.Rd
15422d58beffd118b166352ebe9a3969 *man/availableOmicMethods.Rd
ee2ccfd4359927827533a79e2c46d159 *man/compPCs.Rd
53bf99c71eaba6542de28092d47b7044 *man/computeFreqs.Rd
09265e0f31dfd1b33071d08e5fa0f8cf *man/computeOmicsIntersections.Rd
fb667855719fddcd81f543711986455f *man/computePCs.Rd
f93b5003cfb788e377dba30a170372f4 *man/convertPathway.Rd
84177e85de4eaaf782d6feaaedb993ab *man/createCoxObj.Rd
677d19c8699d1fc5d9643a93d5c86583 *man/createDataModule.Rd
537ad7ac1f27f51f6f080c4a29def2ee *man/createMOMView.Rd
cffb06c4159898337675b15cac149373 *man/downloadPathwayRelationFromReactome.Rd
5cabe54b334f9547885ee55bb1600d8e *man/estimateExprCov.Rd
b8a5c002d9d0b2317630f531c1e3f00f *man/evaluateResampling.Rd
73d81f8e74dca7e5dd1eaee1201ddbae *man/extractSummaryFromBinary.Rd
25525cd1598007e4e77c5ef0bdca52d6 *man/extractSummaryFromCluster.Rd
cba5ecf7fc28829e136a1fbb345305af *man/extractSummaryFromNumberOfEvents.Rd
7e19f1d6c60eb195be88167034d691fd *man/extractSummaryFromPCA.Rd
6b53d4b880c4a90e92ffb048d70aecfb *man/getPathFathers.Rd
e4b50cf80865f4725e49215b516cdf65 *man/glmTest.Rd
50b6e84b505f6e02410dd8bae6e65eea *man/graph-processing.Rd
ea98ff9202a8004c25692ae89d66ccbe *man/guessInvolvement.Rd
b8291043ce9d5f5edafc4dc98dc430e9 *man/guessInvolvementPathway.Rd
019a3de45a2d326ffbc649d169bd9ba2 *man/id2name.Rd
58f5365eea5cd8bfa728e129a55eeb00 *man/makeOmics.Rd
1af17bcccd99bf1d86e8e2c6ae88beeb *man/makePositiveDefinite.Rd
2138aae63447b209417ca9eaa139fcb6 *man/mapPathwaysIDfromGraphite.Rd
a24381e9c6f29bc52a8ec49ffaf3f7ac *man/minOrNA.Rd
074d43452a6553840d7cf50c5406762c *man/multiOmics.Rd
b556cc5d8a49c40ae740c87c641dd941 *man/multiOmicsSurvivalModuleTest.Rd
944abf39e8f5525d084f30b6094cacc0 *man/multiOmicsSurvivalPathwayTest.Rd
cc1dda444f922f6948441eb8fdf8267b *man/multiOmicsTopo.Rd
4020618ff10deb009dea76868702da2e *man/multiOmicsTwoClassModuleTest.Rd
8e793c91758dd1d0685ae8cf6722d8e0 *man/multiOmicsTwoClassPathwayTest.Rd
587fbe83716ec35ad575e6a69fe2588c *man/multiPathwayModuleReport.Rd
b263a60cc0a249d7fb856360f11c4f91 *man/multiPathwayReport.Rd
ecebbeb020a076515a3ca8549fada358 *man/ovarianDataset.Rd
de06f3eb7cfa6bcd1feb37299b2eca33 *man/plotFrequencies.Rd
c0dfba125a661d3d131e6589ce6f26f1 *man/plotModuleHeat.Rd
365420392a169dbea0d3d9cdc3746e58 *man/plotModuleInGraph.Rd
df3f4cf76ed5dd3c92c895047f3ef450 *man/plotModuleKM.Rd
2536b69707ec30626dbca75496478d6d *man/plotModuleReport.Rd
78a3f21aafc4c518fa62bdbf63402aa1 *man/plotMultiPathwayReport.Rd
c700d451ba0d199dfaf38a6febdf0162 *man/plotPathwayHeat.Rd
97e8803f63ecaa85c28604f3c38fc441 *man/plotPathwayKM.Rd
f46ba32231bf3e0c7f9ff2d69cb087f1 *man/pvalueSummary.Rd
f7e1a494552c3107658f9a9330d1a7f7 *man/reactSmall.Rd
85e8fc47634b7419aecd13b180d8963f *man/removeSelfLoops.Rd
cb23600a03498176a8f7a01ef86654c0 *man/resampling-Survival.Rd
2d936c2fc08eefcd265e8e2dd900be81 *man/resampling-TwoClass.Rd
66e694001f9fbf9ed4e686ef4caf36fe *man/resampling.Rd
c4bf8a97e205fd150bd4947bfbfb07ef *man/runSupertest.Rd
a994f266d4f35ffaae1a08b15f45a2d2 *man/showMOSpalette.Rd
83197d8e56a1c3ca4b697f37cd542925 *man/showModule.Rd
90a759fb857a1293a3e785e8f7a028c6 *man/showOmics.Rd
3b50b44539cc490fb3cbece7181dfef3 *man/showPathway.Rd
5374b58198b1fc2d34785a8859cae4af *man/sparseCompPCs.Rd
4ea1ee6b845c74415733e8d8bee53aa2 *man/stripModulesFromPathways.Rd
3f64bad86c3f65f8e48efb4353424ede *man/summarizeInCluster.Rd
5164959c1d40af187c9ba610ed8153e2 *man/summarizeOmicsResByMinPvalue.Rd
f355324f36294fe6ed42713acb9df794 *man/summarizeToBinaryDirectionalEvents.Rd
cf7a7a20214702d91be563ab70bdd9a6 *man/summarizeToBinaryEvents.Rd
58596cd4ae2633db465a9160e090e78a *man/summarizeToNumberOfDirectionalEvents.Rd
7a215f372d627cdefdac594d50916cc6 *man/summarizeToNumberOfEvents.Rd
3dfa0d6ff1a466f90d16f5d7ff297d53 *man/summarizeWithPca.Rd
78a408121400bf395d8aac1811fd3d90 *man/survivalcox.Rd
7a2d8c0f7de066db29283b5415e04edd *man/survivalcoxr.Rd
04e59712fe022d9c452dabbee0b03a18 *man/topoCompPCs.Rd
bf8eab0348d3ec0d7acb21d3a1e120bb *tests/testthat.R
2133de111ff690646680b2b4be62ad03 *tests/testthat/fixtures/make_useful_objects.R
deeae15788074cb6d2c0e2c65a9036aa *tests/testthat/fixtures/reactBiggerDummy.rds
22a14aee0c7d37771e2c1a0535881d96 *tests/testthat/helper.R
2678c4daf0649ec46c76e9ace21fc838 *tests/testthat/test-MultiOmicsModule.R
a6653aac9aa4e0ac04ef0295b0fbb692 *tests/testthat/test-PlottingMO.R
f86329d22f0f3be9244c2129b8e877e0 *tests/testthat/test-Supertest-accessory-function.R
c511932d84ada02fc569f23706e35551 *tests/testthat/test-createReport.R
56adc3b7d582535b33de9a57445fc437 *tests/testthat/test-extract-summary.R
146ae66cad5d5e168c88e893ffa02c52 *tests/testthat/test-general-utilities.R
3b960b6d05a5f71232e5e1fac885840c *tests/testthat/test-makeOmics.R
0b886a9ceca5406950bb4ddc2d69ca5a *tests/testthat/test-resampling.R
ac1a12620a18d6c412ccea02e35e73c0 *tests/testthat/test-summarize.R
268888d877d1f95767eee1313b3aaec4 *tests/testthat/test-supertest.R
64792bffc5cb0cb6fa84dd6b33fbc183 *tests/testthat/test-survivalResultsObj.R
09428eb65e3841ef3c7b0ced939f1c0e *tests/testthat/test-twoClassObjects.R
fc5b990b0a4590d61943d2967ecbb18d *vignettes/mosclip_vignette.Rmd
