8d8af156377dffe2ca728f476a0992ff *DESCRIPTION
34b9c70a4dd824359f929f2f03627d04 *NAMESPACE
436f4d87148f5cc466a95be5503ad695 *R/GWAPMap.R
36a07793630bd99bc9dd04857672475c *R/MethQTLInput-class.R
5fa3f02ddb01803a187520a3cda291a7 *R/MethQTLResult-class.R
3f71207bfce3f6ac171819bb59ce4a31 *R/cluster.R
9d6c7a0ecd6ff3d2c0aa1822fe6c48ed *R/compute_methQTL.R
06428ddb162219ef8485b4d7d07db746 *R/correlation_blocks.R
a851b3bfb56df2f7b5249cf1f2fcdd01 *R/data_import.R
5a27668672732908405d12fde274a324 *R/imputation.R
382e3ba4a0dca91f466399b0ae195a2d *R/interpretation.R
1a4ca371728be5dd5ade2ad034f5da06 *R/options.R
ee372f5883d165c27a179d483f5b451b *R/plotting.R
218c4698d3eff3aa091465a75aac6c85 *R/utilities.R
a092bffbf2d3fb8e673b170d5e33a3b6 *README.md
71203a207bbfe43eefabfc4e0140bbac *build/vignette.rds
f8cde8796cb16874fa1c2a4c001cbdfe *inst/CITATION
be42832dc4dfdd5ed45d05e5a5000826 *inst/NEWS
72c81044a48ad713aea398809a99450b *inst/doc/MAGAR.R
575750b30311ddc3a9acf41eb36ff71a *inst/doc/MAGAR.Rmd
46cf5931f7d963e4309dbcde5ec745d6 *inst/doc/MAGAR.html
1f5b4b92abf8f756f138e6d71c978a72 *inst/extdata/MethQTLResult_chr18/MethQTLResult.RData
0cee10c55c2638e19f5a89362a8b90fa *inst/extdata/MethQTLResult_chr18/anno_geno.RDS
d0a2cc1a0aacad71f2f5a6561fb3315b *inst/extdata/MethQTLResult_chr18/anno_meth.RDS
84f1a83ab797664dc693a46b61207d7e *inst/extdata/MethQTLResult_chr18/correlation_blocks.RDS
3b921f975195db10fe69d92a9bc2ce51 *inst/extdata/MethQTLResult_chr18/result_frame.RDS
d966b899714cdb40f0391b40a18cadc7 *inst/extdata/Rscript/rscript_chromosome_job.R
cb0d16a7a4da34cc0532c85eb9e26e4f *inst/extdata/Rscript/rscript_summary.R
de93d38cf42d473645de0dd0647b4095 *inst/extdata/Rscript/simulation/create_simulated_data.R
a9df6295fe14876b8f62f08f88d9c476 *inst/extdata/Rscript/simulation/validate_correlation_blocks.R
9f705e00d1680b85d96c056a5d6683c9 *inst/extdata/qtl_options_probes450.json
1c8f8cc38a3bbc874069976f41ad04d2 *inst/extdata/qtl_options_probesEPIC.json
3c4fbd46748eafc80befaa82f29bf344 *inst/extdata/reduced_methQTL/MethQTLInput.RData
0cee10c55c2638e19f5a89362a8b90fa *inst/extdata/reduced_methQTL/anno_geno.RDS
12be4fbc86622488fed98eddba2100f0 *inst/extdata/reduced_methQTL/anno_meth.RDS
99f47c80d5d81dbc2bc61f529fd64fb2 *inst/extdata/reduced_methQTL/geno_data.h5
633d5ad68e1fa39ff2a49edf7c55898c *inst/extdata/reduced_methQTL/meth_data.h5
02c10edfbb1b257821ab639356d4ee18 *inst/extdata/reduced_methQTL/pheno_data.RDS
a3639614d5557f8fb14c3b91c59bf86d *inst/extdata/rnbeads_options.xml
9bd6268e4266a9899f95a0cec6496a95 *inst/unitTests/test_structure.R
57413b796d9b2bef2fb7a27e908e6a1b *man/MethQTLInput-class.Rd
bad92be7656b6afd623fab2730ef5363 *man/MethQTLResult-class.Rd
4758ab31b052d0625dfe336125c9ce21 *man/QTL.OPTIONS.Rd
5373185fba206851bbacfa4ab482f568 *man/computeCorrelationBlocks.Rd
18a1c59f760b8451b3c2f262b9f213ce *man/doImport.Rd
2c11efc940f5a4b864ef38a87285bd4d *man/doMethQTL.Rd
f6a932b77458b24277ac9134cff85c91 *man/doMethQTLChromosome.Rd
c0c50bcb46416207a3ee2de0bb62fd21 *man/filterPval.Rd
558a60e33557ecc82993e85934190fd0 *man/getAnno.Rd
e2df2dd880570b56f8665c203ac98cd3 *man/getCorrelationBlocks.Rd
7f34f08fa788cc04b925d387428143d7 *man/getGeno.Rd
009588bcb7e5e2bb2945ed23ed95733f *man/getMethData.Rd
bde46675f0268e193639ad40b5a62b9f *man/getOverlapUniverse.Rd
0ef949d4d48afc9847301b4bd13b6da9 *man/getOverlappingQTL.Rd
6f822cf448a049f486e242201a3ee45a *man/getPheno.Rd
ac3dc10affada578072b0828d34f7992 *man/getResult.Rd
6d4ee362438cc8460a78c6e03b813004 *man/getResultGWASMap.Rd
970055992af66a4901d1c4a5bdcda16e *man/getSamples.Rd
28143de95d3b138b9c56f297c3fe275d *man/getSpecificQTL.Rd
5c22dba5208df63c3d6988275a4c0525 *man/imputeMeth.Rd
0e379a3cbd12e3d43588f1a2ab96a043 *man/joinMethQTLResult.Rd
03b4681fe0ea0ea94b8b5b658d4aa988 *man/loadMethQTLInput.Rd
ae047eedaf515839e0243bc21e1a9a3a *man/loadMethQTLResult.Rd
45b7b3fb1fb669cf3c163ffcd928fd81 *man/overlapInputs.Rd
23871acef95d59febf89f1360e685737 *man/overlapQTLs.Rd
33a4dfd881d43f292da018a21535a10d *man/qtlAnnotationEnrichment.Rd
b3a3253c7021daaf3df33ab73c6fff78 *man/qtlBaseSubstitutionEnrichment.Rd
c76523ea8af95b590fb1705d7cee6dfc *man/qtlDistanceScatterplot.Rd
8f3349e28dc93dff1a113844784f80a6 *man/qtlGetOption.Rd
71a58733b702e297c6116978fa2d6b38 *man/qtlJSON2options.Rd
52c51f7315d886c4a48fac9000ace06e *man/qtlManhattanPlot.Rd
8a492329a1767b20885f30e8bfe81756 *man/qtlOptions2JSON.Rd
ab474ca1e338a1b9f296eb9e03e0fab8 *man/qtlPlotBaseSubstitution.Rd
29a6626418f8e7829cb57b007504100f *man/qtlPlotClusterSize.Rd
e115b70303f2c61175aa067e60c4544c *man/qtlPlotSNPCpGInteraction.Rd
bc65851c9da3a49438395da2f8590e28 *man/qtlSetOption.Rd
e76203631dc84608fa53d2c2a4f9f9d8 *man/qtlTFBSMotifEnrichment.Rd
3b112270bfb4904bf02d3e87b09a22dd *man/qtlUpSetPlotCorBlocks.Rd
566982c31140ceb16f288453f9ae3485 *man/qtlUpSetPlotTagCpGs.Rd
fb77e0d651581d8d03eaf437ba091d8a *man/qtlUpsetPlot.Rd
fc88b369df016dde410ecda95e364fa8 *man/qtlVennPlot.Rd
72bf8c3c56ca09ce20cf5eb95d8d1519 *man/saveMethQTLInput.Rd
dbee174b94d328c6f5fbf784277b99a9 *man/saveMethQTLResult.Rd
6b1f9a68760deb0cc26f604e89b2eee5 *tests/runTests.R
575750b30311ddc3a9acf41eb36ff71a *vignettes/MAGAR.Rmd
b00a86921190b7ce4d2fa297035b0f0d *vignettes/biblio.bib
