d309d71b0e27615b9a977e41bbb061e3 *DESCRIPTION
4ebb7c51983dd8123c87b2ebab1dc3d5 *LICENSE
0e1a2261ee93d896b9c08864bbec03ed *NAMESPACE
a11ddf6f4c57ed4402e9a8111ea8424a *NEWS
c9eccb1d97b41919339e975d2da7552d *R/Data.R
eb27a147dbf21e83c1060152439195bd *R/FeatureNbTuner.R
3eb81667ddbb0735d5e22060bf2f0127 *R/FeatureRanking.R
f38eb5fc8dbff26ab350af0ef96b317d *R/LedPredClass.R
c5160e0aa4294fc908d5819309365181 *R/Model.R
482203a32a08d3cf01466eb3283d355b *R/ModelPerformance.R
b1c3448a081b47944c300c5af073059d *R/ParameterTuner.R
589e98670b60602a690d414422672b1d *R/createModel.R
9d064516e54849243e27f6eaef5d6f4e *R/evaluateModelPerformance.R
25cf23f14d8d28bcff96a7f36fa7ef95 *R/ledpred.R
e0dc15c0bd2e09f0dcae1a676e327ebd *R/mapFeaturesToCRMs.R
565741a4592575ad2c8c7d600af973a1 *R/mcTune.R
6bb94471d752d451dd72c98dfbd4ff0b *R/rankFeatures.R
dda8d304a14ecdac5eae42414e847890 *R/scoreData.R
105f9565e9e721bf7897951a5b62176c *R/tuneFeatureNb.R
e8cd10508095880ab653ac4a490a947e *build/vignette.rds
a9b82dcce03b439a79be48ba8b93bd30 *data/crm.features.rda
2121653b85dc22dc229ce97c494fb42b *data/feature.ranking.rda
5b33056f014a0a068f8ad0f5a4c5204b *inst/CITATION
7bfc89961d98f91c4217cad9648d70f2 *inst/doc/LedPred.R
6853fe0e2a4f971ee89c254cd0b249a0 *inst/doc/LedPred.Rnw
55127d0e2a0f7d5a202302549246fef2 *inst/doc/LedPred.pdf
c558e4cf9e8aedf723147f9fe2ceb677 *inst/extdata/259_matrices_lightNames.tf
cd71944c6056e4e08356a47355c149c1 *inst/extdata/2nt_intergenic_droso.freq
7dcf59f7dd722ec4d7bef6cafb36dca1 *inst/extdata/negative_50CADenhancers.bed
75a8ddc57992993ef5e1f80ff80246f9 *inst/extdata/ngs/K4me1_E_F_6_8h_H3_subtracted_reduced.wig
304c3f398c2ad03c716c298dbf22db30 *inst/extdata/ngs/docBoundCRM.bed
1eba9725f6fcb3916311ca1bad6bdf2a *inst/extdata/ngs/dtcfBoundCRM.bed
4cb035fd20f6998a70718703cfc46d25 *inst/extdata/ngs/pmadBoundCRM.bed
4db52dc4f090a36c36f9e3d87858adbd *inst/extdata/ngs/pnrBoundCRM.bed
5e2a74a85b052a3ab2170c6b046b2017 *inst/extdata/ngs/tinBoundCRM.bed
ce900ac5571372ce554f13dda942a5c6 *inst/extdata/positive_50CADenhancers.bed
2b418f42380ef5f9a0ea6480b4f10753 *inst/extdata/prediction_small.bed
dd7685a68986a97e1518545b58f3097e *inst/extdata/testdata/230NonActivesEnhancers4_8h_2seqs.bed
e73ac88451ae16a5ac8e46547c18f7a7 *inst/extdata/testdata/23From66ActiveEnhancersInMesoAt68h_2seqs.bed
48a24b70a0b376535542b996af517398 *inst/extdata/testdata/feature_nb.txt
a97ef38597cdeb98e3d7c75bf9897703 *inst/extdata/testdata/feature_rank.txt
b7d8d9ed8be8a11f0d16efc127510796 *inst/extdata/testdata/test_ngs_bed_small/mfile2.tf
23e7f287fc5fc81d8f4ddd88d02efb0d *inst/extdata/testdata/test_ngs_bed_small/negative_5seqs.bed
6a0ac84a944bdb3e041c7edaa8a53452 *inst/extdata/testdata/test_ngs_bed_small/ngs_beds/ngs.bed
98c3f9fe9d9744335b7fbfcfc1be23d3 *inst/extdata/testdata/test_ngs_bed_small/ngs_beds/ngs2.bed
ef449589142ba89e530b860ffec157ae *inst/extdata/testdata/test_ngs_bed_small/outdir_bak/feature_matrix.tab
4f88ad9538aeda9c1856d6cca75fc19b *inst/extdata/testdata/test_ngs_bed_small/positive_2seqs.bed
ec2740f01246e16ee3039ba2e1e27590 *man/LedPred.Rd
5336629399d057d8b074b8195af38b89 *man/createModel.Rd
cdf5d695334984d0696b8c52d97708da *man/crm.features.Rd
5220dce69f4b5e592bb9d7927a410e5a *man/evaluateModelPerformance.Rd
ca8f208d9581bbb2f3088ffe1f8d6800 *man/feature.ranking.Rd
a433f67b56edb47183fb459612ba10ca *man/mapFeaturesToCRMs.Rd
52fa88ef59fb3451e69ea85605f59532 *man/mcTune.Rd
b2380e4d7db493add445f0e5737d6b25 *man/rankFeatures.Rd
7a5bc4478484719f2c84fcb0cfdd3886 *man/scoreData.Rd
a7d620fdefe09a7bff5e0c8914ad498e *man/tuneFeatureNb.Rd
775ba6a8ff58a9ec133041366481ea31 *tests/testthat.R
f77c2bd58a19021744c30cc6c84e18ef *tests/testthat/data_iris2/feature.ranking.rda
1d95ecbd461a789a70bd4cbefd036233 *tests/testthat/data_iris2/iris2.rda
6ff419d657e6f19cbf35a4e24f8f2f14 *tests/testthat/data_iris2/x.rda
1e059a6e48b37ccac64a9993da7e3189 *tests/testthat/data_iris2/y.rda
86351254e669ec479ee39b49b94131c0 *tests/testthat/test-iris2_Data.R
1f0b16d47a0d6b35ecca53ce063b9ccd *tests/testthat/test-iris2_FeatureNbTuner.R
faff7c800851563efd3fe36c878f0ee9 *tests/testthat/test-iris2_FeatureRanking.R
902a32388779d4e6ae5cc905ed8226a3 *tests/testthat/test-iris2_LedPred.R
69da1f120355779586a4de81fc70b8ff *tests/testthat/test-iris2_ModelCreate.R
051817184800eab86b43ccb3a85175c6 *tests/testthat/test-iris2_ModelPerformance.R
6c3a8e1602b90c234c040ee55c89f14f *tests/testthat/test-iris2_ParameterTuner.R
6853fe0e2a4f971ee89c254cd0b249a0 *vignettes/LedPred.Rnw
bfa18a6f136f5c79db586696b021deda *vignettes/_ROCR_perf.png
b7b225768ebdd6e9b724b42bd98aea34 *vignettes/_c_g_eval.png
0d28640ad68ec5649c9c1bbbdf0101da *vignettes/_kappa_measures.png
7975e227e88e75e691d0ac38ea8532ab *vignettes/figs/vignette_ROC_perf.png
0eb6e34965ff80607f60fcab46e99b15 *vignettes/figs/vignette_c_g_eval.png
979f8b55b825abbdd29aa991020a81b8 *vignettes/figs/vignette_kappa_measures.png
