dbda0e9b8103b5534143d9df84f9b6d8 *DESCRIPTION
861641a6de00d3a8bcf1b6ddae8b28a1 *NAMESPACE
177315f725b0cc008f084634756ecd0d *NEWS
f72a32358abe4281e935bbcdb4193ffa *R/LOLA.R
ab79c13803adf175b080f26dd7c05caa *R/calcLocEnrichment.R
6a986a4e1cbe26b525be9d037bc742d0 *R/data.R
d1d34fc01be6aee5ea1f9e70240a41a9 *R/examples/example.R
c243fdf0fbb77343878c4b0bff22b388 *R/examples/example2.R
911f5313d7835511df7c718c108bbbbf *R/loadRegionDB.R
e47207bd2f6bfdcf4120d242994f9853 *R/postEnrichment.R
a77b98fe3cb12fa5f69e7b107626aed9 *R/splitFileIntoCollection.R
95471657cc65669a3b6e101ecc1a2d19 *R/utility.R
d807187182fc039a83343f8ff35f2f95 *README.md
c96ebdff4ce0585278f4bee155f83e13 *build/vignette.rds
b58627797ae17245c12d7d7586dd7bda *data/sample_input.RData
9e101b1b50620f54b62fb298611114ac *data/sample_universe.RData
a922f2544b436d4baea5537dd3cd5354 *inst/CITATION
4be8c92b8707d6d7767318206bcd573b *inst/doc/choosingUniverse.R
ab8ecf837ac883c0c5587e2143707970 *inst/doc/choosingUniverse.Rmd
87e65406ba4b577aa027920a1ac0f079 *inst/doc/choosingUniverse.html
a04e71669a9fa8824e4fec7ebf5e0b3a *inst/doc/gettingStarted.R
0541cfc25f2c697ba8f46d6e753824d6 *inst/doc/gettingStarted.Rmd
972e9365bf6a79480872710815219a71 *inst/doc/gettingStarted.html
1ed765b2898720dfc468ea500a89c043 *inst/doc/usingLOLACore.R
09247d5a0ee802b06a452dd4a2d9f05e *inst/doc/usingLOLACore.Rmd
21784475f624c9ce9a68d55865104233 *inst/doc/usingLOLACore.html
8a0e9d873cc0409b0ca4e83103a458e4 *inst/extdata/examples/combined_regions.bed
0abeb2e38c96db3c248da710a90ad5c4 *inst/extdata/hg19/ucsc_example/collection.txt
d27f1ef73a44abc577b95ac8b7858098 *inst/extdata/hg19/ucsc_example/index.txt
2efe7d09742fbd7d5668dcd0c8d15db3 *inst/extdata/hg19/ucsc_example/regions/cpgIslandExt.bed
c91cf10ca317235a54ff5f26c2ddb51c *inst/extdata/hg19/ucsc_example/regions/laminB1Lads.bed
77a3e268a8d6bf32613d5cfd46328eef *inst/extdata/hg19/ucsc_example/regions/numtSAssembled.bed
b81ae934b502bda2ec59f31be5ee7675 *inst/extdata/hg19/ucsc_example/regions/vistaEnhancers.bed
0d6aacd8d87eea2c5b1ccfc09971d561 *inst/extdata/hg19/ucsc_example/regions/vistaEnhancers_colNames.bed
59cd3432078d90b537ef01021a9de7af *inst/extdata/hg19/ucsc_example/sizes.txt
0abeb2e38c96db3c248da710a90ad5c4 *inst/extdata/multi/collection1/collection.txt
d27f1ef73a44abc577b95ac8b7858098 *inst/extdata/multi/collection1/index.txt
ec6fce6a86d27a7b09ceed833ce4b556 *inst/extdata/multi/collection1/regions/cpgIslandExt.bed
a97b82aa363c1e9480170298f7fa3cbe *inst/extdata/multi/collection1/regions/laminB1Lads.bed
01d9b39aebef8ea39e627474374c0d85 *inst/extdata/multi/collection1/regions/vistaEnhancers.bed
2a6cddabb1aac76451c69a354f0b249f *inst/extdata/multi/collection1/sizes.txt
d27f1ef73a44abc577b95ac8b7858098 *inst/extdata/multi/collection2/index.txt
ec6fce6a86d27a7b09ceed833ce4b556 *inst/extdata/multi/collection2/regions/cpgIslandExt.bed
a97b82aa363c1e9480170298f7fa3cbe *inst/extdata/multi/collection2/regions/laminB1Lads.bed
01d9b39aebef8ea39e627474374c0d85 *inst/extdata/multi/collection2/regions/vistaEnhancers.bed
2a6cddabb1aac76451c69a354f0b249f *inst/extdata/multi/collection2/sizes.txt
6662a2735721f99529114c9c0c1a95e4 *inst/scripts/LOLA
9595f1d5872061b4579af26ce4312b3b *inst/web/README.md
9ac4c1b58eb85c014914f58e550400a9 *inst/web/allEnrichments.tsv
a56acab8071107b03b848f632263c644 *inst/web/index.html
9d6c306930e625fdd0c9fd13c2c7ffdb *inst/web/webComponents/ajax-loader.gif
592477d76c8e6a9898b729f9608becd2 *inst/web/webComponents/d3.min.js
d307496efe5fbac7d5164c5ef8536971 *inst/web/webComponents/gridstyle.css
6cd20b2a071baf82472ee90fbe973da4 *man/LOLA.Rd
ed389b51468f7ed440e8ac7bfa0573f7 *man/buildRestrictedUniverse.Rd
c6766b1c8a8c0fb665bf32c25ab7866d *man/checkUniverseAppropriateness.Rd
95dd51802a65572cd9aa004332a7652d *man/cleanws.Rd
54e403a3a4eddb3c870cdec373fee5ce *man/countOverlapsAnyRev.Rd
e10dddf0b8261e61312aae54e0de89b5 *man/extractEnrichmentOverlaps.Rd
20a305651e32492e86a8a690fd28e1e4 *man/figures/LOLA-logo.png
bdbed396d6e2d80772d8fd479f5b475a *man/getRegionFile.Rd
9b4fd78a5ffb67c4b2c5bdadaf1545bc *man/getRegionSet.Rd
d00dfb3eab073089b58e41b77d725f86 *man/lapplyAlias.Rd
47e590298f13fb66736206e91a373fe4 *man/listRegionSets.Rd
1a6237fb4e0d358d6039b64a2cb2f94a *man/listToGRangesList.Rd
ba598c5cf876a7c96185ea098ce93788 *man/loadRegionDB.Rd
c1bfa42356754a1e535ef9eb882e1cdb *man/mergeRegionDBs.Rd
93926d74ac87d1c50c1a2af5acc3f208 *man/nlist.Rd
558ffc97c0eba1cb9368bd9ec69df327 *man/plotTopLOLAEnrichments.Rd
0b14843758bdcee59a4fb7ac9680bfae *man/readBed.Rd
38443fbc2fd067ef14a77a95fb18c001 *man/readCollection.Rd
16bd87752167700c68eb616f158e499b *man/readCollectionAnnotation.Rd
61be06e9c82b8429eb6903b216e587e0 *man/readCollectionFiles.Rd
d045c13805c75dde66bcc4bc648240f8 *man/readRegionGRL.Rd
e583db042609938ac412b7cb7593727c *man/readRegionSetAnnotation.Rd
2b6a6b5a17649280abaf6d9821fb11ed *man/redefineUserSets.Rd
609b1b28c7b01fc29d51de3e1d43e6be *man/replaceFileExtension.Rd
75dd42f63843a144cb1737c13ae76255 *man/runLOLA.Rd
0371a24c85fd9c85c41aa27458a8dfc0 *man/sampleGRL.Rd
bdb17bffab0a766e52e8979e679574d8 *man/setLapplyAlias.Rd
d6263a651dd7cb5d214d475f3530e7b5 *man/setSharedDataDir.Rd
87fc562b5ea5eddfe193ea30d6d9748b *man/splitDataTable.Rd
9b06ebd59f13a939fa096cb5a08854a3 *man/splitFileIntoCollection.Rd
342f54d2063d5bb35e3d324124953114 *man/userSets.Rd
e5656304fd43f6a473652962ad43ad3b *man/userUniverse.Rd
294aade9ea51d90d654608aa353125cf *man/write.tsv.Rd
248b220a0517b183aa39ea2ff88bd976 *man/writeCombinedEnrichment.Rd
564a57be614a546896254c0a40d521f8 *man/writeDataTableSplitByColumn.Rd
4ce37d6b3e06af41196cb0f26aa69287 *tests/testthat.R
57623cb2158ea96d8e43ca82c8e2a243 *tests/testthat/test_all.R
ab8ecf837ac883c0c5587e2143707970 *vignettes/choosingUniverse.Rmd
0541cfc25f2c697ba8f46d6e753824d6 *vignettes/gettingStarted.Rmd
09247d5a0ee802b06a452dd4a2d9f05e *vignettes/usingLOLACore.Rmd
