05e856f2748803ac8c6a93cd4164eb29 *DESCRIPTION
02b2f9abfc439b1418a6111876987c84 *NAMESPACE
3f8df22fb0cc70e35cdd4aedfd5d5b3a *NEWS
dcd1a886f27e34ef1ba849ad79471673 *R/AtomicList-class.R
8a145b30ad5af793b42444fcd46b44d7 *R/AtomicList-utils.R
885a5aa2a22187285931373b34537e60 *R/CompressedAtomicList-class.R
b516bf4b60a17aa95452d0b0b8626c97 *R/CompressedAtomicList-summarization.R
82e5804968ae8705626cf66c57d50954 *R/CompressedDataFrameList-class.R
ca4a86d459261907a8635a9cfa81dfbb *R/CompressedGrouping-class.R
9068d42e44cb813df3f9b39f76526d13 *R/CompressedHitsList-class.R
7e0ea9d4056d1bca26cc2f70fb5f72d7 *R/CompressedList-class.R
8f344d6087e2e8dd54d8f7e4cd9d8b8e *R/CompressedList-comparison.R
94938df3b6671d90d092fed33958fc4a *R/CompressedRangesList-class.R
2b7bc43f1744d5b03888d67ee4a368c5 *R/DataFrameList-class.R
9b56667490ed792ae32c51ea8bcf5e5e *R/DataFrameList-utils.R
74a9f5199f517354972b0428e9c75d38 *R/Grouping-class.R
c3f09413c0726c765169290b66c8a203 *R/Hits-class-leftovers.R
13e98f33245b6b5b23647d4c094c0d5c *R/IPos-class.R
717e6da8c434b36731e9815053a9dba3 *R/IPosList-class.R
f0c760a7ead4a0c0cc896e8393381633 *R/IPosRanges-class.R
799b8b237311a7566567eafe88c9faa5 *R/IPosRanges-comparison.R
6e28cf407e8219b6a34022f9b5aae824 *R/IRanges-class.R
6e3b7d52e98137513bef9b060fbd276a *R/IRanges-constructor.R
8e451513bc5928e50d795e0bfb1409bc *R/IRanges-utils.R
73564e290a1a155ca6997f54c01b4ff3 *R/IRangesList-class.R
2b5664b51edfd841736bea02e5ededed *R/IntegerRangesList-class.R
d46b988d212f691866ff7a3eff9ee9e0 *R/MaskCollection-class.R
60b772de7daceae230128ae9b5072454 *R/NCList-class.R
5ccbf90fd8be3d1d74861d8ab99b473d *R/RangedSelection-class.R
41517356ef10be35f2d3a99817f447a6 *R/Ranges-and-RangesList-classes.R
43fba3693157a2c74ddc6075248b34b5 *R/Rle-class-leftovers.R
24f6c5d47f0b0045a09202faab50571c *R/RleViews-class.R
58e46884db44f943ee61788cd3fc159e *R/RleViews-summarization.R
129e74a9cc53104368242a6338cdd659 *R/RleViewsList-class.R
e167fb378b6d814326b030286065f334 *R/RleViewsList-utils.R
da76f60cdcd44e659749f3aa8b78a600 *R/SimpleGrouping-class.R
b2eb68b371cf0662f4b382c6e5a8dbf7 *R/Vector-class-leftovers.R
7b4612e4879cdc36c86bfd03394c0fca *R/Views-class.R
9e4522736b886e4466b253444484127d *R/ViewsList-class.R
2acc6614fa2adf282441e45673000b7d *R/cbind-Rle-methods.R
5743fdaabee6d3574f457ba75c46e18d *R/coverage-methods.R
a5f606f30682ca5ac6711643952a4f19 *R/cvg-methods.R
b2e82e0e840a090931337f0718f68bc5 *R/extractList.R
c401d92e3e7802b1c22a445a32cef6f1 *R/extractListFragments.R
7b4d5d4a38b8b4da534a75a75b0ef04d *R/findOverlaps-methods.R
d25d0efb23d84d561c34bbf5c79634f3 *R/inter-range-methods.R
ee3311527657edf22200bf3046d1ae40 *R/intra-range-methods.R
f9972c824e24f8e72e6ef7d2da64abae *R/makeIRangesFromDataFrame.R
fd2b471ef0180ad25a505373670239a2 *R/multisplit.R
f45c1ea546663c9f0dfccd0dd3e495f4 *R/nearest-methods.R
4bc6def2661ee0ec992351dea2f5f731 *R/range-squeezers.R
68c84560d3ccd5921b53f280bd4924b1 *R/read.Mask.R
17cf6c5b31eb0d57ebbc868cecd6cd74 *R/reverse-methods.R
8ff52ac94fbb3372e38b3ab32b4c4ab6 *R/seqapply.R
e9e9e84dd84497ef4d7875a6685f9dda *R/setops-methods.R
b9805758313a6ee56706c544e15fb939 *R/slice-methods.R
307191c614d487350018acdbcf3a56d3 *R/subsetting-utils.R
3975460091e8ac9774087d10a095cb29 *R/thread-control.R
f518b6cb3e86207f4b3a76ebcd52006a *R/tile-methods.R
2fff4027091bf811148257eb4d9733d3 *R/windows-methods.R
dc5b5dcaef07f56ddbac3045a97e18d7 *R/zzz.R
29e5dc7313a10f67c15b92547e48dbda *README.md
c95c37fc006f1b660ee637198edfc582 *TODO
6d88aa9d5d83cbea52163ed9f32aa4a2 *build/vignette.rds
bcb46671f9de67f4c98c54cd2fb7b0a6 *inst/CITATION
15283a286fc597ad6697940bec782838 *inst/doc/IRangesOverview.R
0bde699d5959a8cfe6c289efa8d91ee4 *inst/doc/IRangesOverview.Rnw
0213b5055fafde2a2a6f68d2b7c5db51 *inst/doc/IRangesOverview.pdf
52de33fea127b175a672f1111918d83e *inst/extdata/ce2chrM.bed
ca079beb19039f7d29b69ab61dd82392 *inst/extdata/ce2chrM.fa.out
f5576b89a0e2103c0035a8164d10047d *inst/extdata/hg18liftAll.lft
d10ef80e45f68805b1642a324356ccdc *inst/extdata/hs_b36v3_chrY.agp
39570cb0530ba0ba32c57cc5dc77e643 *inst/include/IRanges_defines.h
5c21960b3866a912bfd5da9bf116a286 *inst/include/IRanges_interface.h
f8ed0d8935f16e1f71dc4eeff7e85488 *inst/include/_IRanges_stubs.c
0ddfb180f409ab9776afc5b097a4792a *inst/unitTests/test_AtomicList-class.R
7fafd147951f03f65d4a15a8c39dab5b *inst/unitTests/test_AtomicList-summarization.R
d82c8e044ea759a935d49c365e5071a8 *inst/unitTests/test_AtomicList-utils.R
fa88bea2eb4511605a5fb3ea14a625be *inst/unitTests/test_DataFrame-utils.R
3c3931ed318d23480e561805885901e2 *inst/unitTests/test_DataFrameList.R
9357b7a7f93d07163e3a038599eb7e71 *inst/unitTests/test_Grouping-class.R
5759757056488b351760801cb8650cd8 *inst/unitTests/test_HitsList.R
dfd1d184aaa1df7f277b0b6499bc8f92 *inst/unitTests/test_IPos-class.R
58c071583ad8a454b4e063e756db41c7 *inst/unitTests/test_IRanges-class.R
ed8bc87b2204bcb88c3497ef69c98ce0 *inst/unitTests/test_IRanges-constructor.R
850a23cd1cf7dbdd730666b5d5e5bcc7 *inst/unitTests/test_IRangesList-class.R
185bac47f53dd085dfb775441d975d69 *inst/unitTests/test_NCList-class.R
006d90098a89f3c5ba132683560d6977 *inst/unitTests/test_Ranges-comparison.R
34af3e210df02db67ae6d0c4cc3aee86 *inst/unitTests/test_RleViews.R
688f8c25be7c8fdb15995bf2d2480221 *inst/unitTests/test_RleViewsList.R
69a1eb3791dfa33b2381a09783d5a66e *inst/unitTests/test_coverage-methods.R
3bbc134e23f2cf42f48376e1bd9efa6f *inst/unitTests/test_extractList.R
f4e9469ba65752916e660c7a07cc8024 *inst/unitTests/test_findOverlaps-methods.R
eebcd1c6100f9bcbb3b6730dc9d8f219 *inst/unitTests/test_inter-range-methods.R
c1396fca2c2d202b704e7bdcee8357ae *inst/unitTests/test_intra-range-methods.R
e8937afe793d883855471c1538dd5a95 *inst/unitTests/test_makeIRangesFromDataFrame.R
76202b2835d198ba7af539401256f90d *inst/unitTests/test_nearest-methods.R
0bf5edc85f2376d7627398802062ce9b *inst/unitTests/test_seqapply.R
bb6f41d283dd52cee6b7b2febf7bb4ef *inst/unitTests/test_setops-methods.R
32afbabee5fca0ab6f6b988485ebc5ec *inst/unitTests/test_split.R
123f4275aa2774a8dcd44135023f3800 *inst/unitTests/test_splitListElements.R
4d792d004851ad143ebdeac3fbb665e9 *inst/unitTests/test_tile-methods.R
b5cb2c207950f8b9322860f2b5c9d429 *man/AtomicList-class.Rd
d311db4c273160a57397cc8cfcd2006f *man/AtomicList-summarization.Rd
de87cb9bb19a208003bbc676dca7039b *man/AtomicList-utils.Rd
9246684c3fa3f981670150f0f6922c3e *man/CompressedHitsList-class.Rd
e4ed78eff315354d2ab453def4860090 *man/CompressedList-class.Rd
3abeb0b026278c09f4b4a29c812e2d24 *man/DataFrameList-class.Rd
8078add5c19223b39d376c01931d18c8 *man/Grouping-class.Rd
7e83cdf872940c80b737c0446871e886 *man/Hits-class-leftovers.Rd
2caa3bac773ef82a1a3ca3dd9c26843f *man/IPos-class.Rd
28318603c6f9db74e3e125a05f332eff *man/IPosRanges-class.Rd
01e0f45cd5a4d95765d802b5f6cfcb86 *man/IPosRanges-comparison.Rd
1e486f22d635dffdf608b789980f00c2 *man/IRanges-class.Rd
c4deb2027ff74e294aeca98dbdc60827 *man/IRanges-constructor.Rd
76aee915532890960fccc1e0d4a68624 *man/IRanges-internals.Rd
63b1fb8e2377ed10010451ebad037dab *man/IRanges-utils.Rd
53d2446d543f8865ea3f5fac2afe84c5 *man/IRangesList-class.Rd
5213047883c436175fe0186d067412bb *man/IntegerRanges-class.Rd
c08759e6bac8ae2233a14d82be98bc9e *man/IntegerRangesList-class.Rd
69c10856118b269f23cfc056680faf9b *man/MaskCollection-class.Rd
5ca51bda7a1e214225cc57900ffe6d4e *man/NCList-class.Rd
3e4afc727fc4b0eae37a8d66830a32bc *man/RangedSelection-class.Rd
929a75a87e2e425a5b56b0e3c56ccfd9 *man/Rle-class-leftovers.Rd
eb1f583e64929884612cead3a86f8486 *man/RleViews-class.Rd
d753038000c03d6b7268592bce8c19b8 *man/RleViewsList-class.Rd
f78ea0a16c08cb1bd076744ae4b86ce7 *man/Vector-class-leftovers.Rd
449628ce903c44e02d466166a3c01fab *man/Views-class.Rd
7181bd150b56b63b01428ea5e69d0590 *man/ViewsList-class.Rd
46a1b42c004dae175f99478f1ee93a5a *man/coverage-methods.Rd
9424432759bcd9e416ebb908735f1a13 *man/extractList.Rd
059c58fbd7ec05c987693b676385c1de *man/extractListFragments.Rd
2b79b5d7590467c64b61a234d092af67 *man/findOverlaps-methods.Rd
851964f1cc276ebdb1d6d8e88983d6df *man/inter-range-methods.Rd
295bc7796b6b3078648d1220fff0db2c *man/intra-range-methods.Rd
0df25db5da6023b910bdd50c55bd93b1 *man/makeIRangesFromDataFrame.Rd
aa4c61419f2f4c49d5649cc97d9e7f64 *man/multisplit.Rd
5c264e1a78d377466157a3dfc0da275a *man/nearest-methods.Rd
655192ade3dc278d516678b2ec4f1f57 *man/range-squeezers.Rd
2c7cf68d30ff1919b3649cb34d9d20cf *man/read.Mask.Rd
98aa986e844e0edd821bb4d325a8263d *man/reverse-methods.Rd
f2a9377dda4bf2acd3dd099f2b1eb630 *man/seqapply.Rd
4e10318772d471aa3a53dbf56256c1dd *man/setops-methods.Rd
bd2cbe90f4f72ea57d7e2c3a0b3c6b13 *man/slice-methods.Rd
14ee157b656c7d72f6f39500807bc087 *man/view-summarization-methods.Rd
f4f036da8b20c7f3e63e62bb12c8670a *src/CompressedAtomicList_utils.c
7248407abc82f094588d9e1175e9a5e5 *src/CompressedIRangesList_class.c
5b02f447f7d5225875f5ae364cf39be3 *src/CompressedList_class.c
f6bdc9c9a480b7db377d92ac180f88a3 *src/Grouping_class.c
80812c186303e11069b37b72da7cf7ed *src/IPosRanges_comparison.c
1a1ba770a32554f75579f9df9093665d *src/IRanges.h
b902ce64fc154af4831ab7b7e0175ad4 *src/IRanges_class.c
22f4edb9657fc0f70ef97098afaec1a4 *src/IRanges_constructor.c
95e3011e37d9dde0d75f3a3819b2acd3 *src/Makevars
ff4c9268c209ace99074eef718ecfc31 *src/NCList.c
ec60d73828ffc236e2b24e2d079e6e7b *src/R_init_IRanges.c
79c45c9c374b2e46f257e86eb140f559 *src/Ranges_class.c
25d7571bfa8a682b31be19f06e6b22b8 *src/RleViews_summarization.c
bab0b4b09cf160fa0109ae25fbb471ef *src/S4Vectors_stubs.c
d744533f123db2713a92f2b19e51c0da *src/SimpleIRangesList_class.c
d659a9bc45d36374d9e95bbd08af171c *src/coverage_methods.c
7075db8e132e7b931642fc38a2658da0 *src/extractListFragments.c
fa86aac9789c8bef2dc16aabc5c47fd6 *src/inter_range_methods.c
01be68cebc5997bf7620e076bd7dc464 *src/thread_control.c
23f5f28e536162f83acb5ee443fe91ca *tests/run_unitTests.R
0bde699d5959a8cfe6c289efa8d91ee4 *vignettes/IRangesOverview.Rnw
