4055ccdc69ed635e24bad46715537870 *DESCRIPTION
9c16ec029d71ce7d91ee061bb322bf54 *NAMESPACE
05faeec0d61e10fd22c1c2b3bed7c9bc *R/AllClasses.R
090a57984cf6ef11f5da83b9f586253f *R/AllGenerics.R
2b25040c5824b2c3cf38c69cb1feb043 *R/AllInternalFunctions.R
b9c8b4411aee6053ff29bb04f612350d *R/Extract-methods.R
143e89a0929b9969d9741fd32cc17a13 *R/INSPEcT-GUI-functions.R
65558e36d7e828250c5c8dec844c0fee *R/INSPEcT-GUI-server.R
71260d1d4be5fca3884702330875ec12 *R/INSPEcT-GUI-ui.R
7ec30e8336720d6c00b919b4fb46a63b *R/ProcessingRateDelay-server.R
0ecf7a0153673e9d579ca71bc0b089e2 *R/ProcessingRateDelay-ui.R
32ac46c8bb179def0c36f94f15120890 *R/ProcessingRateDelayAPP-functions.R
08ab1bf452e1960ed29d7c1777a4b2d2 *R/chisqtest-methods.R
60c15de29faa98a842cc729471924a7a *R/computeConfidenceIntervals.R
c81a5933287a73d67ed4fa533fa5c8a2 *R/correlationPlot-methods.R
05dfca8252ebf6dedcbd8bbb63f74e5c *R/dataDocumentation.R
d5b32960d8cfe4bcede4c0840d305747 *R/geneClass-methods.R
832190ed73f491d0195bc95da03c69b5 *R/inHeatmap-methods.R
2530fce7090108aa1ae96528a05b4d55 *R/logLik-methods.R
7cb42cc34b0b1e01726b4a8eb738117e *R/makeModelRates-methods.R
e5f059f581fdda9189196273e298fcbd *R/makeOscillatorySimModel-methods.R
559e6702ad979a3f5bd1453cc044f072 *R/makeSimDataset-methods.R
a945eb498e5aba6dd4ef81a40af47334 *R/makeSimModel-methods.R
c86f1193970b2adf21a995f503b1814d *R/modelRates-methods.R
85c07386c74b8ce2c9011bafc232ade8 *R/modelRatesNF-methods.R
7b61ffdf1c589da8860e34e9efdfe95e *R/modelSelection-methods.R
9535a60cfa96446464b26a3fc1221236 *R/modelingParams-methods.R
97537a53a638c3ba19ee3c05ddf0f782 *R/newINSPEcT-functions.R
d3945bbd2c01e0ed7deb369a34f15c15 *R/plotGene-methods.R
e4bb620ada1ed71366d4f15dcdb3f802 *R/processingRateDelay-methods.R
b4d82976fd0e2464ea229b76e5b331fd *R/quantifyExpressionsFromBAMs.R
94e613d3bd913440eeb13f14068686c7 *R/quantifyExpressionsFromBWs.R
1095b739a01b784c930cb8b0d7a6fb9d *R/quantifyExpressionsFromTrAbundance.R
faaadfbe639133ce957e3f00a514f427 *R/quantifyExpressionsFromTrCounts-functions.R
eb1c562c4c84f8b1eabb5366c13f0dd6 *R/ratePvals-methods.R
9ea10d1a2e0cf069285a4835bac0a9f2 *R/ratesFirstGuess-methods.R
b238b2b4c869ea28bb27c60ca4e72d8e *R/rocCurve-methods.R
c1fb61df016bd0762f5aacade9268ad7 *R/rocThresholds-methods.R
41c0eb7529989f1bacb71392e42fa55c *R/runShinyApps.R
7f2f470f57ddaf7891fe9f7adfd60be3 *R/setConfidenceIntervals-method.R
b30959daf139184d5959602e3da71f90 *R/show-methods.R
8607b436c08bab0efe9fab271df7ede5 *R/steady-state-methods.R
afc9759079573f11a04a2bd9d2b95e67 *R/steadyNoNascent-methods.R
5bcf4ea65dd36193ef23155d50f12940 *R/viewConfidenceIntervals-methods.R
132060d50cce139cb6392254a8e83048 *R/viewModelRates-methods.R
d428eaafcbefca693d2229dbb654ba72 *R/wrap-up-functions.R
fbde4ae57634c02de05589915a315046 *build/vignette.rds
6882bed1c98f2800612e649300241cc2 *data/allcounts.RData
d379605e795823cef756cd143d41f4af *data/datalist
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7d0f00bd1cc91077662de158904fa16b *data/libsizes.RData
94fd669d50e50391851f74ac45c4f009 *data/matureSim2replicates.RData
dcb6d7e5beda2ed50452acf2fd546614 *data/matureSim3replicates.RData
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f4a57d80a79abe0aad0e7d285a66ca5c *data/nascentSim3replicates.RData
1504b37a98d45ca34dbe7fa85323fd31 *inst/CITATION
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9b7337db1de362e0d713f3c3d72e292d *man/PTreg.Rd
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5eb7f1df10efedb3b206e7681c72f191 *man/calculateRatePvals.Rd
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a432ced2f2de5e4de55b60a17db015ec *man/compareSteady.Rd
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62e9db3d230a197dfc3fa91a6cf88fa5 *man/computeConfidenceIntervals.Rd
e0ef993820ffd9f37db399288a83df2c *man/convergence.Rd
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a3dff4c3b73ea37d9fb377735e63d5ec *man/featureNames-INSPEcT-method.Rd
e786b163bd7ec5bfb0a844de9acbf89c *man/featureWidths.Rd
42780aa018707dcacd742c029ae7c4a6 *man/geneClass.Rd
301e806edb28d498b0aaeb6246d15b15 *man/inHeatmap.Rd
af28e6dbca705da143c86cca3d51a45e *man/inspectFromBAM.Rd
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999f7241d3bf0a4f918328bf4f979a06 *man/libsizes.Rd
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bd1c8d789c4ec19f51da94b524780d2c *man/makeModelRates.Rd
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03283487ed3205e57a44c7893511f962 *man/makeSimDataset.Rd
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3647e0d642e39937ab0ef16467c97dbd *man/modelRatesNF.Rd
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2ed733197788909f62b82661c684f746 *man/ratePvals.Rd
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8e26b7bc08017348d41867857ffa1a86 *man/rocCurve.Rd
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9c461016df681be12d0c0aef5f73f915 *man/setConfidenceIntervals.Rd
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d20d5ef77cd6fc64f4a4e0b74aaa679c *vignettes/bibliography.bib
