65629c0ba54207008214186575518364 *DESCRIPTION
b418d1d9eb0406376882c95230fa107a *NAMESPACE
318e4e0cb373733ebd5adea5332160fa *NEWS
34101706d08857e7292f7a113e3632bc *R/AllGenerics.R
77ce7f9ae42187f8fbd5668555710c2a *R/HTCexp-class.R
718a9caf46fe5ab84ade222688eb9d77 *R/HTClist-class.R
d0cce06a50fefcd067f1339cfd5d4b9a *R/binningC.R
9fa41d22a30a71b496b240be0281227f *R/deprecated.R
9af2a33a7659d3a8439a5b95288070e9 *R/export.R
6cf794b52549f175d535aa99cd40bb0c *R/import.R
422fa7befedf4af8b67044eef5e5793d *R/mapC.R
47b297c859e4153cbf4856cfc04348fc *R/mapC_tracks.R
3e2634b95b102bd399192736f3e3be75 *R/normalize_5C.R
48b3ce9c7465f6296a1b27a03383e352 *R/normalize_hiC.R
bcb8a4ac03750d25570e46afeeb48ad4 *R/pca.R
a2c3b187d9362ef55933ee4222c175b4 *R/qualityControl.R
7dd5a1b28c541ce4153e7b87d5ba2e63 *R/tads.R
ad09f3d30e65a13ded6213b701f2c3df *build/vignette.rds
5bdff71647691ef427eb6368e1ed1465 *data/Nora_5C.RData
bfc1ccf4f279a20e6cb5bab725f55231 *inst/CITATION
dec6d151ef6946dcad511d287919c8ef *inst/doc/HiC_analysis.R
c609ad960c60b01a18a9707a75d06920 *inst/doc/HiC_analysis.Rnw
b1a86ff440ff97c04de38be015960e31 *inst/doc/HiC_analysis.pdf
0e2937733f2acfdb6cbefe3d693bf355 *inst/doc/HiTC.R
ac31906d4a4b6339bfc48c452c68c355 *inst/doc/HiTC.Rnw
4461d149e8b1c2d0f041f03727f32247 *inst/doc/HiTC.pdf
a99714e0212a76ef075ee901daf5b43f *inst/extdata/CTCF_chrX_98892125_102969775.bed
4a0b46a202e5207f2d086c85c4b281a7 *inst/extdata/HIC_gm06690_chr12_chr12_1000000_obs.txt
1736a6f747621686daab8f97e2ac9cc4 *inst/extdata/HIC_gm06690_chr12_chr13_1000000_obs.txt
dfef349448350f471ce943fe6dbe3ef3 *inst/extdata/HIC_gm06690_chr12_chr14_1000000_obs.txt
5dd4c2a487683fff2e351d301fdb3a97 *inst/extdata/HIC_gm06690_chr13_chr13_1000000_obs.txt
7c5007c59eedf4c83528793def638c9d *inst/extdata/HIC_gm06690_chr13_chr14_1000000_obs.txt
aef26d4a05c294915d6380aab5e7d5fe *inst/extdata/HIC_gm06690_chr14_chr14_1000000_obs.txt
10fbe95a60cd04e8c781750900225b9c *inst/extdata/refseq_mm9_chrX_98831149_103425150.bed
49800a7ffc57bb6498d4a6a8ddbd97f2 *man/CQC.Rd
dd698384153fc0cc5268911275c0096d *man/HTCexp-class.Rd
6e34aaa97c2975783025008cf64c532f *man/HTClist-class.Rd
f977922e2417583dc0d600af5a048b3f *man/HiTC-internal.Rd
51e0f44724ad56ff421e73e3b34b6762 *man/Nora_5C.Rd
915982884b679ba9462a13ff9f7eba79 *man/binningC.Rd
00f8b89fe021123434753d0bf9f022f7 *man/directionalityIndex.Rd
24b2472474e61989ab6b67a3d3a35f1f *man/discretize.Rd
1c268e17f9a0a83cd78cc49a98a7dbbd *man/export.my5C.Rd
c73354300ef2f996015e7656017d2621 *man/exportC.Rd
7e06f827bd66c7a7d77071755021c9e2 *man/extractRegion.Rd
9c4b0b856b7d1339c404e422a184131e *man/getAnnotatedRestrictionSites.Rd
fc80a0dc34626540c10dc2a5b360320a *man/getExpectedCounts.Rd
084e5b8393e8ef2aeeacd943cb094575 *man/getPearsonMap.Rd
9e6ba1d641ce55ac144fe59b15778199 *man/getRestrictionFragmentsPerChromosome.Rd
5e86867a7de14310ed6dfc61de46b7ed *man/import.my5C.Rd
f4fa97fd0e9dd87528723efbd7f7aeee *man/importC.Rd
22a54ddc6583f7e565e8926a3aa9be29 *man/intervalsDist.Rd
d8f7243bbb32d873439ea07e0c09bb4e *man/mapC.Rd
c3a03a893243bf383e929c89abd8f58e *man/normICE.Rd
a159b632f1c1d5195374f05734f22434 *man/normLGF.Rd
adb6a903b2d2965ce152f16ad4bd12e9 *man/pca.hic.Rd
dff3d62f7d9be00047ee2a7fe691cdf6 *man/removeIntervals.Rd
5cbce6ba2a08e451c8b04e77022e3093 *man/setGenomicFeatures.Rd
0d549854c6b44a5d41e21f62f7063c70 *man/setIntervalScale.Rd
c609ad960c60b01a18a9707a75d06920 *vignettes/HiC_analysis.Rnw
ac31906d4a4b6339bfc48c452c68c355 *vignettes/HiTC.Rnw
2f0b471e56d3ffa14a5bb37f20a2f5f8 *vignettes/HiTC.bib
a6871dff24fd2e8953d05a99ddf4ccdf *vignettes/HiTC_memory_usage.png
