4e8529047fc14d8fefba469e1b9567fa *DESCRIPTION
0fb08edcbcabd1ad18e58eb376e3b753 *NAMESPACE
4ba26398cab64a1822b104ee26de6f1e *NEWS
9921cb74475f022ef8a51c754530998c *R/GenomicSignatures-class.R
fcda2666a7c0590063fb699c34edbf4f *R/GenomicSignatures-methods.R
cb6bcfcb0eac878fa79423293d21735c *R/PCAGenomicSignatures-methods.R
0ae16bb368f3b7a756675dd35f4e8eb6 *R/annotatePC.R
8c37f7c5b9a96d5df194c90453f297ed *R/annotateRAV.R
b1e071c6c5001035d357201e552b549d *R/availableRAVmodel.R
0ec925028c78a40bbc7bae639d80f75c *R/buildAvgLoading.R
853433d16f5ec3f212feac9b103338fe *R/calculateScore.R
88da4015d90f2c44b7fdcbd2f7010448 *R/data.R
526c536d77921f2b53903e20cb7cf35e *R/drawWordcloud.R
4542c0602f3313444486303c3d655592 *R/extractPC.R
1679e9b2c960158a6099a4abacbe6c10 *R/findSignature.R
b5bc54871ac62cff6db15d9e84a6b2e6 *R/findStudiesInCluster.R
bb4cf17a6f30ce32453d03b3a834539d *R/getMetadata.R
96742c22895c7281c50a6dcea55b923f *R/getModel.R
1dead55abfaea419f206fe205ec0de89 *R/heatmapTable.R
85a9ce4f455581397ab1924bc4a31651 *R/plotAnnotatedPCA.R
b065c0fd4b3b995de1767425354be6ae *R/plotValidate.R
03402c6b516720320b7023316bb4fbdf *R/rmNaInf.R
06adb4d56fae65da0f6cdfe7a1205693 *R/sampleScoreHeatmap.R
b620761860d99e18fb8b4ccc8cb72c93 *R/subsetEnrichedPathways.R
597af23043d475bfb8ccd689d07d838c *R/utils.R
c9850a14fd987175ba666d1cec4ddcae *R/validate.R
974c3df9597e7230ee229d8e38962de8 *R/validatedSignatures.R
63d74cf374805ea99090d4ff00e388d0 *README.md
6336665e06a8ed33855df301fd0ecf18 *build/vignette.rds
a4f3d9cea952e66b7e3f55d8b9b97d33 *data/droplist.RData
878b0758121cf596279174e34cfd67c8 *data/filterList.RData
689d688584ff64c3690fe9f0f648055f *data/miniAllZ.rda
6a37fdc3d9b68ac395dc007900eb6e24 *data/miniRAVmodel.RData
58bad1ca2b0d7cbef93aae38692f2140 *data/miniTCGA.rda
8fc6dae2d57740a7a5c90555ec5cea8e *data/res_hcut.rda
68d73ac4985fef57b750492bb2e18fba *inst/CITATION
c4207c1263250b9d9c318bbccf865a1b *inst/doc/Contents.R
a3cb22bf9372015ac31e11e212389c09 *inst/doc/Contents.Rmd
2e4eb07b93b4ae5a81d7323912b962c4 *inst/doc/Contents.html
6d584bd9033c545fbf58bfef261b236f *inst/doc/Quickstart.R
ef0a3ca86032c18b966562082a5c48de *inst/doc/Quickstart.Rmd
ff4c165791682243686abbacea4252ac *inst/doc/Quickstart.html
ed1797192eafdb1b6837973f32a074a0 *inst/extdata/README.md
e4404e59f335a573d8b77b07093ab2d7 *inst/extdata/availableRAVmodel.csv
ba09c7d5944667d5df90334040afd6c3 *inst/extdata/studyMeta.tsv.gz
cde337b9fcb537e8414ef860f63e340e *inst/scripts/funcForGSEA_plot.R
b04c6bf2df2bd9489834eba8845f814c *inst/scripts/gss.R
340ac10fa44de38436fefab4cbf2746d *inst/scripts/gss.Rmd
41ed8da63c6c1051fc15040dfa2fe614 *inst/scripts/searchPathways.R
c3e0153d3e4b2600a879d4a0f65c2052 *man/GenomicSignatures-class.Rd
5b30da34fa0c37347f9c05b61f5612fa *man/GenomicSignatures-methods.Rd
3d5ee82e2431e27afab3bff90df37942 *man/PCAGenomicSignatures-class.Rd
6c26d3d4905c0a3996dea19b8c120020 *man/PCAGenomicSignatures-methods.Rd
f356b6a4765017497f1ee990f383d040 *man/PCAGenomicSignatures.Rd
7a4e09da20aaaba9366460ff789da8bd *man/PCinRAV.Rd
00f440a3e4ce70ed53adf140bcb74295 *man/annotatePC.Rd
a6b43b022750a6104ecc6e9017dff865 *man/annotateRAV.Rd
3da979594e0cc14c47fac553afa008a7 *man/availableRAVmodel.Rd
927da0de3289467cea16dfc31d3749f5 *man/buildAvgLoading.Rd
27a88e4470010685c76ffc3c1646c26e *man/calculateScore.Rd
4f7c8f5dac5a6ec49f46b055d81db4a7 *man/dot-RAVName.Rd
aef9a117ec837940342f768195546fbd *man/dot-calculateSilhouetteWidth.Rd
f2d8cc590259f38544b2afc36994ab49 *man/dot-loadingCor.Rd
2113af3757091de2c19a04a84ae9fd20 *man/drawWordcloud.Rd
6efd5a73386cf2c79a65786c88106ea6 *man/droplist.Rd
f21ae06dbd388a734076018f69d6e06d *man/extractPC.Rd
d8b911fb7f769d84419ec01f73ab4680 *man/filterList.Rd
81cebb4be17e64ddd7d7e682887beb24 *man/findKeywordInRAV.Rd
f79e2390e1b1129670e4869a55e05bc0 *man/findSignature.Rd
257df4621b5286034253aab4257091fd *man/findStudiesInCluster.Rd
55f4f599cb48a22bea66fb69433a2d71 *man/getModel.Rd
f6e95083b5d84e368462efb547b6548f *man/getRAVInfo.Rd
eb4cb183e1229929b5599793efc778a6 *man/getStudyInfo.Rd
929d86ef414f78ea2907caf7e7061892 *man/heatmapTable.Rd
3c9f1444419d6d4a25cf1c37b8700cf2 *man/meshTable.Rd
e80b91ae203cd574d00f426760e297bb *man/miniAllZ.Rd
0ed18a74993ee506133b94267985c2d1 *man/miniRAVmodel.Rd
e2c1b01c044aecb53255c2414fb8e0dc *man/miniTCGA.Rd
7f05e5d669da9c21455527d7d8bf81fa *man/plotAnnotatedPCA.Rd
ea8aecab209aa5140958ab477daf82c9 *man/plotValidate.Rd
f0c40df95fdcac62e8955fd2610ca501 *man/res_hcut.Rd
1119bf99e66394b2e8a4e66c3f123f05 *man/rmNaInf.Rd
0892e3cb0f454b1a07de6a07985cabbe *man/sampleScoreHeatmap.Rd
3c6aa5fb3c534354f92963a03e0067fb *man/subsetEnrichedPathways.Rd
9a57a38a8b496e24ea909b92b5bc28ba *man/validate.Rd
22b7e8181e743d043072ecb022724ef5 *man/validatedSignatures.Rd
b3c96b8a395fc1a1a58b5a7aa665b866 *tests/testthat.R
392a96032d016557530fbe1aa4896758 *tests/testthat/microTCGA.rds
650cdfe92c8b39e0d6188fcbab625b3d *tests/testthat/test-annotatePC.R
bd3c7ea383c1b946cdf1c6b043b1723b *tests/testthat/test-annotateRAV.R
30a9b0bf62b601e01ffe27e25d6d1df4 *tests/testthat/test-calculateScore.R
9f393c0a55cac04c2c7d16bf27871dec *tests/testthat/test-drawWordcloud.R
c4831560aa605c4a70906fa2fe49ad72 *tests/testthat/test-findSignature.R
1458242a269b9e7c49a5ec8d90681aa1 *tests/testthat/test-findStudiesInCluster.R
c0a3afaccd3bade6c6b3572967ec4b97 *tests/testthat/test-getMetadata.R
e24085dccb438bdb91b2f22ca086ac50 *tests/testthat/test-subsetEnrichedPathways.R
0f59260dce0c48e16da1dfeb2005ae0b *tests/testthat/test-validate.R
ed69fa4eaa5428165ddf3f4810e025c9 *tests/testthat/test-validatedSignatures.R
a3cb22bf9372015ac31e11e212389c09 *vignettes/Contents.Rmd
e3c4f3949ac9b83ddf3bb78c105552ec *vignettes/GSig_model_buildling_diagram.png
b3b76b7a217215032bd8ae3b89aa6db4 *vignettes/GSig_model_usage_diagram.png
d8b78de82d96becfd5331b0cec1b8ef4 *vignettes/GSig_overview.png
ef0a3ca86032c18b966562082a5c48de *vignettes/Quickstart.Rmd
