349a9d0b6e2943568c6cda400ef54056 *DESCRIPTION
3fda4ef1869438e38234772180b15fec *NAMESPACE
ef6355441bc664028a6f3086dfae0e26 *NEWS.md
d6a4a7a4bea0867965e4c0908e4d2f3b *R/DrawingFunctions.R
a98eec9c3a8e33ab004c9e1d9db01839 *R/GenomicPlot.R
7b2449516bfaa7ad17a0012e3a470e54 *R/HandleDataMatrix.R
6c7a45dd361113ebd90ec870ced6de37 *R/HandleFeatures.R
8dcab951760924239e256a425986b91b *R/Parallel.R
1d20c8456a197824d1d51308a0cf20ef *R/Plot_5parts_metagene.R
e9152f4433c1d524a22f9167017e85c3 *R/Plot_bam_correlation.R
3409ada4f6e0a33ad15af1e6459b6efe *R/Plot_locus.R
1d85cac89657c847ba0d11bf9681f598 *R/Plot_locus_with_random.R
ac07926e8c5d5378d7942245333192dc *R/Plot_peak_annotation.R
c55f4f51f1135b7ce21fabd77eacf275 *R/Plot_region.R
e256279268924d930e0f0331b283e2c5 *R/Plot_start_end.R
78665beaeb366341c98ca3f821b23128 *R/Plot_start_end_with_random.R
b4a0d35536131ccd98649e85088d4ab8 *R/ReadData.R
ceac76ebb1d87e17e582c34be0c36688 *R/Setup.R
333e8c26773db0bca3cf1216485cfe57 *R/data.R
208a967dc7bd542b961b717450ab4149 *README.md
49638e0c6fc0aa4afc5990fb59264ec6 *build/vignette.rds
9721baa5a2cb27045389f34689b96616 *data/gf5_genomic.rda
bb2c75855151504ae8ccd33176c4bf96 *data/gf5_meta.rda
2e388ab9e1100ee4d53de6c597d2819f *inst/doc/GenomicPlot_vignettes.R
af424efbff2981cc1b1861991c12d5ad *inst/doc/GenomicPlot_vignettes.html
647b808699efba0666d934aaad785c53 *inst/doc/GenomicPlot_vignettes.rmd
c070c3e016b847831d596e5199da484e *inst/extdata/chip_input_chr19.bam
beea9837c49b1de820318f8c6dbb0cd4 *inst/extdata/chip_input_chr19.bam.bai
2191f3827a2c8395f49197e2fb9ad5a2 *inst/extdata/chip_treat_chr19.bam
e2ce95b12b12f5bdf6d313c9d3ebfbdc *inst/extdata/chip_treat_chr19.bam.bai
11b4534ac9041a423308a2afe231ffe9 *inst/extdata/gencode.v19.annotation_chr19.gtf
a04d57254265438d6927d8025f62ff47 *inst/extdata/gencode.v19.annotation_chr19.gtf.granges.rds
2fd16418e2d209cc8f09b967f2da11fc *inst/extdata/input_chr19.bam
c25ddb59f38387408c49f1dc34f3b7d7 *inst/extdata/input_chr19.bam.bai
8b9522732552cee5f6cbfa657a6d510f *inst/extdata/test_chip_peak_chr19.bed
069fe4648bd52bf2df803ae30f752250 *inst/extdata/test_chip_peak_chr19.narrowPeak
85da97f2669e9fa00d78a6726180be13 *inst/extdata/test_chr19.bedGraph
6468c9d659c5edd409247221128906c9 *inst/extdata/test_clip_peak_chr19.bed
13e062499d76a3302cb3b4ea73545e67 *inst/extdata/test_file1.txt
35edceef9dad2e8ef82e9a477a7b4c06 *inst/extdata/test_file2.txt
91ead61e3c5c35f696ddad43c29d6391 *inst/extdata/test_file3.txt
6364fbff894dc6f222a26277bb33415a *inst/extdata/test_file4.txt
93a6536dded30ab5bd44b7bfa0bcd29a *inst/extdata/test_wig_chr19_+.bw
01a6fca72b8603135aacaeb99ad75e8c *inst/extdata/test_wig_chr19_+.wig
5338fb800c465e7415334c5e4a084411 *inst/extdata/test_wig_chr19_-.bw
7292683d07a104c242069db14f3c44d8 *inst/extdata/test_wig_chr19_-.wig
2b8a64c9cb21297d8e5c0809001b304f *inst/extdata/treat_chr19.bam
88a0d312d6a36571b760ffdbfc6b65b0 *inst/extdata/treat_chr19.bam.bai
62da8799337b3557d42f2edd9106458a *inst/extdata/txdb.sql
0d13169c6a5cd280328a3a7b2396f801 *man/GenomicPlot.Rd
796774e78ac1b76d018800340cc39496 *man/aov_TukeyHSD.Rd
c8dbec84c175fa91705d0708930cc0bc *man/check_constraints.Rd
19e82ca52f4ae4983e285846c5b1a511 *man/custom_TxDb_from_GTF.Rd
eb4f4381bb6deb61a03efcf4a01fbba3 *man/draw_boxplot_by_factor.Rd
8f32fa752c00abacd2df42b562ea8401 *man/draw_boxplot_wo_outlier.Rd
981849d1d744c8613813d1fcd38bfe1a *man/draw_combo_plot.Rd
b67ab429cc8183ae3d88b7f595dbc365 *man/draw_locus_profile.Rd
ef47b43baaf2611e8d1bcbfefad7d030 *man/draw_matrix_heatmap.Rd
e890538c845ecc12a2e45f6b4ce082b2 *man/draw_mean_se_barplot.Rd
ed40f02ab510af5d303848aa8a30f8b1 *man/draw_quantile_plot.Rd
b6e4c463fdfa22ffc096fa28a397b663 *man/draw_rank_plot.Rd
2b28d4333339c3b19c230aef478f9314 *man/draw_region_landmark.Rd
9fef332e981989d42ff2c2878d6b2111 *man/draw_region_name.Rd
0c66c11415ae1b785cdf89a620c34b09 *man/draw_region_profile.Rd
6596b1a7fdc3fba562f239ca0282ce10 *man/draw_stacked_plot.Rd
b5778d6fd110acee5ad31773c5f5ccf4 *man/draw_stacked_profile.Rd
9ef53eb2937b12a5a436a0cfaa248ddb *man/effective_size.Rd
2fc4d6e638dd4f961299297d944070a7 *man/extdata.Rd
b617360840988223c0a442485e7dd835 *man/extract_longest_tx.Rd
77453905eae46400989b9419b6afb9ed *man/filter_by_nonoverlaps_stranded.Rd
7010ea664a7497892aaa7ad0d014f29a *man/filter_by_overlaps_nonstranded.Rd
c0c5b9d0a092737bcae546f35a631114 *man/filter_by_overlaps_stranded.Rd
63272d6f22ff6cc275a2977f8c4d2c0f *man/find_mate.Rd
b4dd9d182a6f45f2fd0444c62585c906 *man/gene2tx.Rd
8f6917e3ba427454b69fc2fdc36ad65a *man/get_genomic_feature_coordinates.Rd
1e9658e67dfea545c960c14eb2dcb788 *man/get_targeted_genes.Rd
9b7cd9b6ee5bf5a0c5347ad815fb7c7d *man/get_txdb_features.Rd
b3a4210223d335a89f2e1f2668032aa0 *man/gf5_genomic.Rd
e2c69bea03de5a9b04fed5ae9131ba7e *man/gf5_meta.Rd
8ca592dd776ff93225edd6f4915858a5 *man/gr2df.Rd
60c133e7df7ddee4228c2d7e18c7fc03 *man/handle_bam.Rd
83d933353c3aa83de62d56600a7c2425 *man/handle_bed.Rd
f778aef263cda86126295bde8864d307 *man/handle_bedGraph.Rd
02d3cbd5887035fefd470acc1b1cc46e *man/handle_bw.Rd
96939972c6c2e29e76a62344f8a2d6ff *man/handle_input.Rd
980af51793da6943f7ec6335561985bf *man/handle_wig.Rd
8177a7268f70b0867bbcbb1e3b355a25 *man/impute_hm.Rd
05bacba85013a3c76cba421b5f3182c4 *man/inspect_matrix.Rd
632a74393e4c37542e69572cb507088c *man/make_subTxDb_from_GTF.Rd
2aecdac31a1773be2666c0d694175d48 *man/overlap_pair.Rd
3c401bef26c14fec6965cdd3a88db7a0 *man/overlap_quad.Rd
fe3e2db08c6f558cca1abfa9435f4ced *man/overlap_triple.Rd
eeec2ce2bae53f8c0b079f6f649d2f91 *man/parallel_countOverlaps.Rd
94003048ac1ecf9cb86e2307bc5c521c *man/parallel_scoreMatrixBin.Rd
e0739bff28d502fd60e6baf904b882e4 *man/plot_5parts_metagene.Rd
b8c4c92d29bb4b8966d24f5a68aea371 *man/plot_bam_correlation.Rd
cb267b9108280a40f0398aeeac729199 *man/plot_locus.Rd
e2cd9a63b36e0b664c54b29972f9cd3e *man/plot_locus_with_random.Rd
2c971c6bfa1ba9eaa98db22cc8f42c0f *man/plot_named_list.Rd
8c5e8c6f9bbd9b7d3d8c804a3d215c4a *man/plot_overlap_bed.Rd
c3f6631bafa13635d3fa5fa1cf829979 *man/plot_overlap_genes.Rd
f0c168e44b0924b476b1efc5ecb1b642 *man/plot_peak_annotation.Rd
0ea0a3368d6bb2673db442c665e61912 *man/plot_region.Rd
1011942ccb914216ec3aa12796dacd74 *man/plot_start_end.Rd
2da6ef0a92c5d982a48bdf0faea0a349 *man/plot_start_end_with_random.Rd
8f40609b88d7669d3da797a03c72d91b *man/prepare_3parts_genomic_features.Rd
5d2519f166c8b3bcd516b7e1281e3b7e *man/prepare_5parts_genomic_features.Rd
0edf346af4c3b8979f16825f464536bd *man/process_scoreMatrix.Rd
592ae1d5b3a257734eda2bc20af20951 *man/rank_rows.Rd
1ac21ff39ad4f03c21e9da1f4d51d204 *man/ratio_over_input.Rd
878e397076d8c712d2a1ea8057235645 *man/rm_outlier.Rd
23ddbbf21da84dd65787947f4cc669de *man/setImportParams.Rd
8a3b42685cdab2eef9d0a0fe3fe027a2 *man/set_seqinfo.Rd
13a5a2296de22feef4c1bb65ad020284 *man/start_parallel.Rd
2ddd02e0fa4c98d6d94853731869ed7d *man/stop_parallel.Rd
c0b0fbd3e5902d03100b61a6eabbc1e1 *man/txdb.sql.Rd
a43b5b1dcbb0f223d8cbe2967b0ee73f *tests/test-plotFunctions.R
7cc2baf16fe98022334c64b660e26f8d *tests/test-shortFunctions.R
5ee0fae691d2275710900c7a983191a5 *tests/test_plot_5parts_metagene1.png
8113957bc4b49180d9bab0f8ed4d3687 *tests/test_plot_locus1.png
3c91969a33ef3094cf84af1a896e24c8 *tests/test_plot_locus2.png
77511bfe9ad954782a0751c30d434705 *tests/test_plot_peak_annotation1.png
647b808699efba0666d934aaad785c53 *vignettes/GenomicPlot_vignettes.rmd
