9ff35ee9a9d61323bbaaa6d5397177ad *DESCRIPTION
aab1a1a690350b2cafe0aa22ee226218 *LICENSE
168ebfab71a76fab29dffd78ae64b4b7 *NAMESPACE
ff31ed9485344d70b0338cf5978826ab *R/AltSplicingJunctionSupported.R
a9d6330bcdb782c8eec55b0ac6dd85d7 *R/ExonSkipping.R
635531d379e1cc01194c9b587cce8670 *R/IntronRetention.R
5f6784303e484d5eef8aeeb860f3fc34 *R/OverlapFunctions.R
90663ae9666dc83948ec10733acb7ef0 *R/UTR2UTR53.R
c3bc89535246d0e221d067ff08137959 *R/classes.R
afcb5103b2ca2d69067d798065e340dc *R/compareTranscripts.R
308d9d4cfaca116d7b0daeba156ca709 *R/leafCutter.R
0075fe1fade5549101d864fd49be347a *R/longestORF.R
732dc733bf374c9d0024c4e4dd680751 *R/plotGvisTracks.R
0d11fe6a60043062f441f4853dfba064 *R/quickAnalysis.R
0ec25a3d6232e1876c595b0e2537ad2a *R/readWhippetFiles.R
8a510d3c66206366538cdd30a2fef28b *README.md
86fd9cd1ce67c47154671acb038186c2 *build/vignette.rds
e5b46e94fec5fe30da73f727cf97644e *inst/NEWS
19590591bc842cb027e3108babae76bd *inst/doc/Vignette.R
a986096c2549236e38c331c1eb88d14f *inst/doc/Vignette.Rmd
c558af660f1bbbcc63d92e46d3aecae4 *inst/doc/Vignette.html
a9ba88162c20eddfc11c351d92fdcd09 *inst/extdata/dexseq_process.R
96640b2e1735a4a23445a79154a89427 *inst/extdata/dexseq_results_significant.txt
21a6c46d6193261e7bbcf4c7e1849f61 *inst/extdata/example_gtf.gtf
c500de5992f92ebc83581899338c6d87 *inst/extdata/gencode.vM14.dexseq.gtf
b28e8fedfee20f988113945166d52e0d *inst/extdata/leafcutter/per_intron_results.tab
962287f8f3daaaae762c5f2eb8ab6267 *inst/extdata/leafviz2table.R
d340f2509b1c4e1ccc74ed9e3b7799a0 *inst/extdata/whippet/01_v_21.diff.gz
a751ff8f2e7f44be9fafbcedf6380afc *inst/extdata/whippet/A01.jnc.gz
14fc894210fd1272e528613d72c5827b *inst/extdata/whippet/A01.psi.gz
4bb796ee52ba3c7bff0733fd152de391 *inst/extdata/whippet/A21.jnc.gz
bab86c79e977dd697ad0fdf037e2575d *inst/extdata/whippet/A21.psi.gz
a64605c248ed60f04f1d5dfc334f181d *inst/extdata/whippet/B01.jnc.gz
44c88c32417f2146e5e1a394243531be *inst/extdata/whippet/B01.psi.gz
1210ab94aae2149703812243434a9883 *inst/extdata/whippet/B21.jnc.gz
63b0451eca429697512091dbe65874cc *inst/extdata/whippet/B21.psi.gz
2e602b0c6fc2831e31e1d5b8d9249e73 *man/DEXSeqIdsToGeneIds.Rd
ddf7b96ed92a3c2092a631dc5a1949b7 *man/UTR2UTR53.Rd
8bf59e541ff5581efdd15b64cf1a94dd *man/addBroadTypes.Rd
da9ead58548f3efc93a0f216862c7d7b *man/addIntronInTranscript.Rd
c1eb05741db1cefa247cf1e3cc63155b *man/addSets.Rd
903db45af7238c1849cd7a8f1883fcc4 *man/alternativeIntronUsage.Rd
734f608a6356fc6699a848d6f070b6bf *man/annotateGeneModel.Rd
9353b093f6a7ed99e42a84a63ca80435 *man/attrChangeAltSpliced.Rd
2181c47260d73050a1b40c4fafbb8ca6 *man/coordinates-methods.Rd
20f95ded1d14d310eaff78ba9e2042f3 *man/cumsumANDpad.Rd
54fc4c0c696b93be95cf0b5eecf45505 *man/diffSplicingResults-methods.Rd
b28aab5bb257fcd40c33236ac0e681a5 *man/exonsToTranscripts.Rd
792b5585596d2a5c38a993a385c3ca38 *man/filterGtfOverlap.Rd
098674b17a4ac87bd617959cad6a0a40 *man/filterWhippetEvents.Rd
d752efd7b1753a3b80c8141ca89c9b33 *man/findDEXexonType.Rd
2a4ca3138af5b5f6aa4b6263733fff55 *man/findExonContainingTranscripts.Rd
39f56a6efa881b3edccbf8476ceb0b08 *man/findIntronContainingTranscripts.Rd
80a906f90f7df12899c3706027272544 *man/findJunctionPairs.Rd
34527bb546e65551883316da72e508f9 *man/formatWhippetEvents.Rd
cab7badcf385eb492473ffd8f2653223 *man/getOrfs.Rd
4d45811150392d2c9d633b8ad78e54a3 *man/getUOrfs.Rd
aa567c6275b052bda3bba1334e81274c *man/junctions-methods.Rd
9c3856203ac22f597112aff7a1864f63 *man/leafcutterTranscriptChangeSummary.Rd
94b3ac55ecab4385bd10975a105c2e16 *man/makeGeneModel.Rd
d406aaa387ee137008e0fc0b4b8111ad *man/maxLocation.Rd
3a02e28c825f5e4e744988bb8dadb8d0 *man/orfDiff.Rd
436aff162dfdb9a7829efc0a2e228cae *man/orfSimilarity.Rd
3baf135a522c6bf41c505c65a720c9ff *man/overlapTypes.Rd
46f7577071c6be2165597ab806991c18 *man/readCounts-methods.Rd
c6518fb407e6e1dac2c979851f319ef9 *man/readWhippetDIFFfiles.Rd
995b57e0aaef686a6b0501e80c1f869a *man/readWhippetDataSet.Rd
01d37ebab07400330c416a5a1e26b3fc *man/readWhippetJNCfiles.Rd
0d8100990850e0ed9f38be0d93160d5a *man/readWhippetPSIfiles.Rd
41ac3310b724e9638d51b569c3631dbf *man/removeDuplicateTranscripts.Rd
a880c9873d15c98bf029cd591547e42b *man/removeSameExon.Rd
e9759dfcac3d2069f6830d6604815898 *man/removeVersion.Rd
b79e69228403f4a5200ae947fdc9e59f *man/reorderExonNumbers.Rd
85619b19e6c8fbb7955f91520ebff3b1 *man/replaceJunction.Rd
d60f4d336cd02d74e2d93ddb6c54229f *man/skipExonInTranscript.Rd
a286e441e2140ab55b25e2541fb0bea1 *man/summariseExonTypes.Rd
19701ae2e7cb726da85ce662cb888af4 *man/transcriptChangeSummary.Rd
083967c3e07053f8570918fc1ae69d2e *man/whippetDataSet-class.Rd
fea6891b549d8aa17ecd7ee0d6ceff99 *man/whippetTranscriptChangeSummary.Rd
6d26733679ed6b74e4d24e18c9c060b1 *vignettes/Eif4a2_clu_1396.png
2ffc35f0fd85895ba8d550c0094e7b9d *vignettes/HexLogoGeneStructureTools.png
f7f4f6036f27541cc9d2477cf3194756 *vignettes/Rnps1_clu_1281.png
a986096c2549236e38c331c1eb88d14f *vignettes/Vignette.Rmd
3698442979f33919b00f2f13819af691 *vignettes/transcript_types_broad_table
3698442979f33919b00f2f13819af691 *vignettes/transcript_types_broad_table.txt
bdc2aa8587807d41ec55c68d28ea4407 *vignettes/whippetAltAceDon.png
730e6149c424e4be3bf6b60e2bae4711 *vignettes/whippetAltFirstLast.png
4952886b0ea104e74b98b7b9273636bd *vignettes/whippetExonSkip.png
f8ffdea99572246077dce6029771540a *vignettes/whippetIntronRetention.png
